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REF: updates to be compatible with q2-stats #104

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merged 3 commits into from
Oct 24, 2024
Merged

REF: updates to be compatible with q2-stats #104

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7a7bf7f
updates to stats
cherman2 Oct 24, 2024
6a217cc
silly space
cherman2 Oct 24, 2024
fb4e8ee
types
cherman2 Oct 24, 2024
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4 changes: 2 additions & 2 deletions q2_fmt/_peds.py
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Expand Up @@ -21,8 +21,8 @@

from qiime2 import Metadata
from q2_fmt._engraftment import _get_to_baseline_ref
from q2_fmt._util import json_replace
from q2_stats._visualizer import _make_stats
from q2_stats.util import json_replace
from q2_stats.plots.raincloud import _make_stats


def peds(ctx, table, metadata, peds_metric, time_column, reference_column,
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26 changes: 0 additions & 26 deletions q2_fmt/_util.py
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5 changes: 3 additions & 2 deletions q2_fmt/plugin_setup.py
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Expand Up @@ -17,8 +17,9 @@
import q2_fmt
from q2_types.feature_table import (
FeatureTable, Frequency, RelativeFrequency, PresenceAbsence)
from q2_stats._type import (Dist1D, Matched, Independent, Ordered,
Unordered, StatsTable, Pairwise, NestedOrdered)
from q2_stats.types import (Dist1D, Matched, Independent, Ordered,
Unordered, StatsTable, Pairwise,
NestedOrdered)
import q2_fmt._examples as ex

citations = Citations.load('citations.bib', package='q2_fmt')
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