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Merge pull request #24 from ChrisgKent/main
Added the hev/400/v1.0.0 scheme
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| # hev 400bp v1.0.0 | ||
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| ## Description | ||
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| A full genome scheme designed for the Hepatitis E virus. Utilising phylogenic downsampling to reduce representation bias | ||
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| ## Overviews | ||
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|  | ||
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| ## Details | ||
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| ```json | ||
| { | ||
| "ampliconsize": 400, | ||
| "schemeversion": "v1.0.0", | ||
| "schemename": "hev", | ||
| "primer_bed_md5": "ade0aa4af6881675ffc2203377550bec", | ||
| "reference_fasta_md5": "fd028d0c1bda3584965792fb57cec0a5", | ||
| "status": "draft", | ||
| "citations": [], | ||
| "authors": [ | ||
| "artic network", | ||
| "quick lab" | ||
| ], | ||
| "algorithmversion": "primalscheme3:1.1.4", | ||
| "species": [ | ||
| 291484 | ||
| ], | ||
| "license": "CC BY-SA 4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v1.3.0", | ||
| "articbedversion": "v3.0", | ||
| "description": "A full genome scheme designed for the Hepatitis E virus. Utilising phylogenic downsampling to reduce representation bias", | ||
| "derivedfrom": null, | ||
| "collections": [ | ||
| "QUICK-LAB", | ||
| "WASTE-WATER", | ||
| "WHOLE-GENOME" | ||
| ] | ||
| } | ||
| ``` | ||
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| ------------------------------------------------------------------------ | ||
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| This work is licensed under a [Creative Commons Attribution-ShareAlike 4.0 International License](http://creativecommons.org/licenses/by-sa/4.0/) | ||
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| @@ -0,0 +1,28 @@ | ||
| { | ||
| "ampliconsize": 400, | ||
| "schemeversion": "v1.0.0", | ||
| "schemename": "hev", | ||
| "primer_bed_md5": "ade0aa4af6881675ffc2203377550bec", | ||
| "reference_fasta_md5": "fd028d0c1bda3584965792fb57cec0a5", | ||
| "status": "draft", | ||
| "citations": [], | ||
| "authors": [ | ||
| "artic network", | ||
| "quick lab" | ||
| ], | ||
| "algorithmversion": "primalscheme3:1.1.4", | ||
| "species": [ | ||
| 291484 | ||
| ], | ||
| "license": "CC BY-SA 4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v1.3.0", | ||
| "articbedversion": "v3.0", | ||
| "description": "A full genome scheme designed for the Hepatitis E virus. Utilising phylogenic downsampling to reduce representation bias", | ||
| "derivedfrom": null, | ||
| "collections": [ | ||
| "QUICK-LAB", | ||
| "WASTE-WATER", | ||
| "WHOLE-GENOME" | ||
| ] | ||
| } |
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| >NC_001434.1 | ||
| GCCATGGAGGCCCATCAGTTTATTAAGGCTCCTGGCATCACTACTGCTATTGAGCAGGCT | ||
| GCTCTAGCAGCGGCCAACTCTGCCCTTGCGAATGCTGTGGTAGTTAGGCCTTTTCTCTCT | ||
| CACCAGCAGATTGAGATCCTTATTAACCTAATGCAACCTCGCCAGCTTGTTTTCCGCCCC | ||
| GAGGTTTTCTGGAACCATCCCATCCAGCGTGTTATCCATAATGAGCTGGAGCTTTACTGT | ||
| CGCGCCCGTTCCGGCCGCTGCCTTGAAATTGGTGCCCACCCCCGCTCAATAAATGATAAC | ||
| CCTAATGTGGTCCACCGCTGCTTCCTCCGCCCTGCCGGGCGTGATGTTCAGCGTTGGTAT | ||
| ACTGCCCCTACCCGCGGGCCGGCTGCTAATTGCCGGCGTTCCGCACTGCGCGGGCTCCCC | ||
| GCTGCTGACCGCACTTACTGCTTCGACGGGTTTTCTGGCTGTAACTTTCCCGCCGAGACT | ||
| GGCGTCGCCCTCTATTCTCTCCATGATATGTCACCATCTGATGTCGCCGAGGCTATGTTC | ||
| CGCCATGGTATGACGCGGCTTTACGCTGCCCTCCACCTCCCGCCTGAGGTCCTGTTGCCC | ||
| CCTGGCACATACCGCACCGCGTCGTACTTGCTGATCCATGACGGCAGGCGCGTTGTGGTG | ||
| ACGTATGAGGGTGACACTAGTGCTGGTTATAACCACGATGTTTCCAACCTGCGCTCCTGG | ||
| ATTAGAACCACTAAGGTTACCGGAGACCATCCTCTCGTCATTGAGCGGGTTAGGGCCATT | ||
| GGCTGCCACTTTGTCCTCTTACTCACGGCAGCCCCGGAGCCATCACCTACGCCCTATGTT | ||
| CCTTACCCCCGGTCTACCGAGGTCTATGTCCGATCGATCTTCGGCCCGGGTGGTACCCCC | ||
| TCCCTATTTCCAACCTCATGCTCCACTAAGTCGACCTTCCATGCTGTCCCTGCCCATATC | ||
| TGGGACCGTCTCATGTTGTTCGGGGCCACCCTAGATGACCAAGCCTTTTGCTGCTCCCGC | ||
| CTAATGACTTACCTCCGTGGCATTAGCTACAAGGTTACTGTGGGCACCCTTGTTGCCAAT | ||
| GAAGGCTGGAACGCCTCTGAGGTCGCTCTTACAGCTGTCATCACTGCCGCCTACCTTACC | ||
| ATCTGCCACCAGCGGTACCTCCGCACTCAGGCTATATCTAAGGGGATGCGCCGTCTGGAG | ||
| CGGGAGCATGCTCAGAAGTTTATAACACGCCTCTACAGTTGGCTCTTTGAGAAGTCCGGC | ||
| CGTGATTATATCCCCGGCCGTCAGTTGGAGTTCTACGCTCAGTGTAGGCGCTGGCTCTCG | ||
| GCCGGCTTTCATCTTGACCCACGGGTGTTGGTTTTTGATGAGTCGGCCCCCTGCCACTGT | ||
| AGGACTGCGATTCGTAAGGCGGTCTCAAAGTTTTGCTGTTTTATGAAGTGGCTGGGCCAG | ||
| GAGTGCACCTGTTTCCTACAACCTGCAGAAGGCGCCGTCGGCGACCAGGGCCATGACAAC | ||
| GAGGCCTATGAGGGGTCTGATGTCGACCCCGCTGAATCCGCTATTAGTGACATATCTGGG | ||
| TCCTACGTCGTCCCTGGCACTGCCCTCCAACCGCTTTACCAAGCCCTTGACCTCCCCGCT | ||
| GAGATTGTGGCTCGTGCAGGCCGGCTGACCGCCACAGTAAAGGTCTCCCAGGTCGACGGG | ||
| CGGATCGATTGTGAGACCCTTCTCGGTAATAAAACCTTCCGCACGTCGTTTGTTGACGGG | ||
| GCGGTTTTAGAGACTAATGGCCCAGAGCGCCACAATCTCTCTTTTGATGCCAGTCAGAGC | ||
| ACTATGGCCGCCGGCCCTTTCAGTCTCACCTATGCCGCCTCTGCTGCTGGGCTGGAGGTG | ||
| CGCTATGTCGCTGCCGGGCTTGACCACCGGGCGGTTTTTGCCCCCGGCGTTTCACCCCGG | ||
| TCAGCCCCTGGCGAGGTCACCGCCTTTTGTTCTGCCCTATACAGGTTTAATCGCGAGGCC | ||
| CAGCGCCTTTCGCTCACCGGTAATTTTTGGTTCCATCCTGAGGGGCTCCTTGGCCCCTTT | ||
| GCCCCGTTTTCCCCCGGGCATGTTTGGGAGTCGGCTAATCCATTCTGTGGAGAGAGCACA | ||
| CTTTACACCCGCACTTGGTCGGAGGTTGATGCTGTTTCTAGTCCAGCCCAGCCCGACTTA | ||
| GGTTTTATATCTGAGCCTTCTATACCTAGTAGGGCCGCCACACTTACCCCGGCGGCCCCT | ||
| CTACCCCCCCCTGCACCGGATCCTTCCCCTACTCCCTCTGCTCCGGCGCGTGGTGAGCCG | ||
| GCTCCTGGCGCTACCGCCCGGGCCCCGGCCATAACCCACCAGGCGGCCCGGCATCGCCGC | ||
| CTGCTCTTTACCTACCCGGATGGCTCTAAGGTATTCGCCGGCTCGCTGTTTGAGTCGACA | ||
| TGTACCTGGCTCGTTAACGCGTCTAATGTTGACCACCGCCCTGGCGGTGGGCTCTGTCAT | ||
| GCATTTTACCAAAGGTACCCCGCATCCTTTGATGCTGCCTCTTTTGTGATGCGCGACGGC | ||
| GCGGCCGCCTATACATTAACCCCCCGGCCAATAATTCACGCCGTCGCTCCTGATTATAGG | ||
| TTGGAACATAACCCAAAGATGCTTGAGGCTGCCTACCGGGAGACTTGCTCCCGCCTCGGT | ||
| ACCGCTGCATACCCACTCCTCGGGACCGGCATATACCAGGTGCCGATCGGTCCCAGTTTT | ||
| GACGCCTGGGAGCGGAATCACCGCCCCGGGGATGAGTTGTACCTTCCTGAGCTTGCTGCC | ||
| AGATGGTTCGAGGCCAATAGGCCGACCTGCCCAACTCTCACTATAACTGAGGATGTTGCA | ||
| CGGACAGCAAATCTGGCTATCGAACTTGACTCAGCCACAGACGTCGGCCGGGCCTGTGCC | ||
| GGCTGTCGAGTCACCCCCGGCGTTGTGCAGTACCAGTTTACCGCAGGTGTGCCTGGATCC | ||
| GGCAAGTCCCGCTCTATTACCCAAGCCGACGTGGACGTTGTCGTGGTCCCGACCCGTGAG | ||
| TTGCGTAATGCCTGGCGCCGCCGCGGCTTCGCTGCTTTCACCCCGCACACTGCCGCCAGA | ||
| GTCACCCAGGGGCGCCGGGTTGTCATTGATGAGGCCCCGTCCCTTCCCCCTCACTTGCTG | ||
| CTGCTCCACATGCAGCGGGCCGCCACCGTCCACCTTCTTGGTGACCCGAATCAGATCCCA | ||
| GCCATCGACTTTGAGCACGCCGGGCTCGTTCCCGCCATCAGGCCCGATTTGGCCCCCACC | ||
| TCCTGGTGGCATGTGACCCATCGCTGCCCTGCGGATGTATGTGAGCTGATCCGTGGCGCA | ||
| TACCCTATGATTCAGACCACTAGTCGGGTCCTCCGGTCGTTGTTCTGGGGTGAGCCTGCT | ||
| GTTGGGCAGAAACTAGTGTTCACCCAGGCAGCTAAGGCCGCCAACCCCGGTTCAGTGACG | ||
| GTCCATGAGGCACAGGGCGCTACCTACACAGAGACTACCATTATTGCCACGGCAGATGCT | ||
| CGAGGCCTCATTCAGTCGTCCCGAGCTCATGCCATTGTTGCCTTGACGCGCCACACTGAG | ||
| AAGTGCGTCATCATTGACGCACCAGGCCTGCTTCGCGAGGTGGGCATCTCCGATGCAATC | ||
| GTTAATAACTTTTTCCTTGCTGGTGGCGAAATTGGCCACCAGCGCCCATCTGTTATCCCT | ||
| CGCGGCAATCCTGACGCCAATGTTGACACCTTGGCTGCCTTCCCGCCGTCTTGCCAGATT | ||
| AGCGCCTTCCATCAGTTGGCTGAGGAGCTTGGCCACAGACCTGCCCCTGTCGCGGCTGTT | ||
| CTACCGCCCTGCCCTGAGCTTGAACAGGGCCTTCTCTACCTGCCCCAAGAACTCACCACC | ||
| TGTGATAGTGTCGTAACATTTGAATTAACAGATATTGTGCACTGTCGTATGGCCGCCCCG | ||
| AGCCAGCGCAAGGCCGTGCTGTCCACGCTTGTGGGCCATTACGGCCGCCGCACAAAGCTC | ||
| TACAATGCCTCCCACTCTGATGTTCGCGACTCTCTCGCCCGTTTTATCCCGGCCATTGGC | ||
| CACGTACAGGTTACAACCTGTGAATTGTACGAGCTAGTGGAGGCCATGGTCGAGAAGGGC | ||
| CAGGACGGCTCCGCCGTCCTTGAGCTCGACCTTTGTAACCGCGACGTGTCCAGGATCACC | ||
| TTCTTCCAGAAAGATTGTAATAAATTCACCACGGGGGAGACCATCGCCCATGGTAAAGTG | ||
| GGCCAGGGCATTTCGGCCTGGAGTAAGACCTTCTGTGCCCTTTTCGGCCCCTGGTTCCGT | ||
| GCTATTGAGAAGGCTATCCTGGCCCTGCTCCCTCAGGGTGTGTTTTATGGGGATGCCTTT | ||
| GATGACACCGTCTTCTCGGCGGCTGTGGCCGCAGCAAGGGCATCCATGGTGTTTGAGAAT | ||
| GACTTTTCTGAGTTTGATTCCACCCAGAATAATTTTTCCTTGGGCCTAGAGTGTGCTATT | ||
| ATGGTGGAGTGTGGGATGCCGCAGTGGCTCATCCGCTTGTACCACCTTATAAGGTCTGCG | ||
| TGGATTCTGCAGGCCCCGAAGGAGTCCCTGCGAGGGTTTTGGAAGAAACACTCCGGTGAG | ||
| CCCGGCACCCTTCTATGGAATACAGTCTGGAACATGGCCGTTATCACCCACTGTTATGAT | ||
| TTCCGCGATCTGCAGGTGGCCGCCTTTAAAGGTGATGATTCGATAGTGCTTTGCAGTGAG | ||
| TACCGTCAGAGCCCAGGGGCTGCTGTCCTGATTGCTGGCTGTGGCCTAAAGTTGAAGGTG | ||
| GATTTCCGTCCGATTGGTTTGTATGCAGGTGTTGTGGTGGCCCCCGGCCTTGGCGCGCTT | ||
| CCTGACGTCGTGCGCTTCGCCGGCCGGCTTACTGAGAAGAATTGGGGCCCTGGCCCCGAG | ||
| CGGGCGAAGCAGCTCCGCCTCGCTGTGAGTGATTTTCTCCGCAAGCTCACGAATGTAGCT | ||
| CAGATGTGTGTGGATGTTGTCTCTCGTGTTTATGGGGTTTCCCCTGGACTCGTTCATAAC | ||
| CTGATTGGCATGCTACAGGCTGTTGCTGACGGCAAGGCTCATTTCACTGAGTCAGTGAAG | ||
| CCAGTGCTCGACCTGACAAATTCAATCCTGTGTCGGGTGGAATGAATAACATGTCTTCTG | ||
| CTGCGCCCATGGGTTCGCGACCATGCGCCCTCGGCCTATTTTGCTGTTGCTCCTCATGTT | ||
| TCTGCCTATGCTGCCCGCGCCACCGCCCGGTCAGCCGTCTGGCCGCCGCCGTGGGCGGCG | ||
| CAGCGGCGGTTCCGGCGGTGGTTTCTGGGGTGACCGGGCTGATTCTCAGCCCTTCGCAAT | ||
| CCCCTATATTCATCCAACCAACCCCTTCGCCCCCGATGTCACCGCTGCGGCCGGGGCTGG | ||
| ACCTCGTGTTCGCCAACCCGCCCGACCACTCGGCTCCGCTTGGCGTGACCAGGCCCAGCG | ||
| CCCCGCCGCTGCCTCACGTCGTAGACCTACCACAGCTGGGGCCGCGCCGCTAACCGCGGT | ||
| CGCTCCGGCCCATGACACCCCGCCAGTGCCTGATGTTGACTCCCGCGGCGCCATCCTGCG | ||
| CCGGCAGTATAACCTATCAACATCTCCCCTTACCTCTTCCGTGGCCACCGGTACAAACTT | ||
| GGTTCTTTACGCCGCTCCTCTTAGCCCGCTTCTACCCCTCCAGGACGGCACCAATACTCA | ||
| TATAATGGCTACAGAAGCTTCTAATTATGCCCAGTACCGGGTTGTTCGTGCTACAATTCG | ||
| CTACCGCCCGCTGGTCCCCAACGCTGTTGGTGGCTACGCCATCTCCATCTCGTTCTGGCC | ||
| ACAGACCACCACCACCCCGACGTCCGTTGACATGAATTCAATAACCTCGACTGATGTTCG | ||
| TATTTTAGTCCAGCCCGGCATAGCCTCCGAGCATGTTATCCCAAGTGAGCGCCTACACTA | ||
| TCGTAACCAAGGTTGGCGCTCTGTTGAGACCTCCGGGGTGGCGGAGGAGGAGGCCACCTC | ||
| TGGTCTTGTTATGCTTTGCATACATGGCTCACTCGTAAACTCTTATACTAATACACCTTA | ||
| TACCGGTGCCCTCGGGCTGTTGGACTTTGCCCTCGAACTTGAGTTCCGCAACCTCACCCC | ||
| CGGTAATACCAACACGCGGGTCTCCCGTTACTCCAGCACTGCCCGTCACCGCCTTCGTCG | ||
| CGGTGCAGATGGGACTGCCGAGCTCACCACCACGGCTGCTACCCGCTTCATGAAGGACCT | ||
| CTATTTTACTAGTACTAATGGTGTCGGTGAGATCGGCCGCGGGATAGCGCTTACCCTGTT | ||
| TAACCTTGCTGACACCCTGCTTGGCGGTCTACCGACAGAATTGATTTCGTCGGCTGGTGG | ||
| CCAGCTGTTCTACTCTCGCCCCGTCGTCTCAGCCAATGGCGAGCCGACTGTTAAGCTGTA | ||
| TACATCTGTAGAGAATGCTCAGCAGGATAAGGGTATTGCAATCCCGCATGACATCGACCT | ||
| CGGGGAATCTCGTGTAGTTATTCAGGATTATGATAACCAACATGAGCAGGACCGACCGAC | ||
| ACCTTCCCCAGCCCCATCGCGCCCCTTTTCTGTCCTCCGAGCTAATGATGTGCTTTGGCT | ||
| TTCTCTCACCGCTGCCGAGTATGACCAGTCCACTTACGGCTCTTCGACCGGCCCAGTCTA | ||
| TGTCTCTGACTCTGTGACCTTGGTTAATGTAGCGACCGGCGCGCAGGCCGTTGCCCGGTC | ||
| GCTCGACTGGACCAAGGTCACACTTGATGGTCGCCCCCTTTCCACCACCCAGCAGTATTC | ||
| AAAGACCTTCTTTGTCCTGCCGCTCCGCGGTAAGCTCTCCTTTTGGGAGGCAGGTACTAC | ||
| TAAAGCCGGGTACCCTTATAATTATAACACCACTGCTAGTGACCAACTGCTCGTTGAGAA | ||
| TGCCGCTGGGCATCGGGTTGCTATTTCCACTTACACCACTAGCCTGGGTGCTGGCCCCGT | ||
| CTCTATTTCCGCGGTTGCTGTTTTAGCCCCCCACTCTGCGCTAGCATTGCTTGAGGATAC | ||
| CATGGACTACCCTGCCCGCGCCCATACTTTCGATGACTTCTGCCCGGAGTGCCGCCCCCT | ||
| TGGCCTCCAGGGCTGTGCTTTTCAGTCTACTGTCGCTGAGCTTCAGCGCCTTAAGATGAA | ||
| GGTGGGTAAAACTCGGGAGTTATAGTTTATTTGCTTGTGCCCCCCTTCTTTCTGTTGCTT | ||
| ATTTCTCATTTCTGCGTTCCGCGCTCCCTGAAAAAA |
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