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| # marv-2023 1000bp v1.0.0 | ||
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| [primalscheme labs](https://labs.primalscheme.com/detail/marv-2023/1000/v1.0.0) | ||
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| ## Description | ||
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| A scheme generated in response to the Marburg virus outbreak, currently (2023) reported in Equatorial Guinea and Cameroon | ||
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| ## Overviews | ||
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|  | ||
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| ## Details | ||
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| ```json | ||
| { | ||
| "ampliconsize": 1000, | ||
| "schemeversion": "v1.0.0", | ||
| "schemename": "marv-2023", | ||
| "primer_bed_md5": "456f574691dac1568438289bc14103a1", | ||
| "reference_fasta_md5": "1cd0d4df77e6b300f9328aa5359998ea", | ||
| "status": "draft", | ||
| "citations": [], | ||
| "authors": [ | ||
| "Chris Kent", | ||
| "Quick Lab" | ||
| ], | ||
| "algorithmversion": "primaldigest:0.1.0", | ||
| "species": [ | ||
| 3052505 | ||
| ], | ||
| "license": "CC BY-SA 4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v1.3.0", | ||
| "articbedversion": "v3.0", | ||
| "description": "A scheme generated in response to the Marburg virus outbreak, currently (2023) reported in Equatorial Guinea and Cameroon", | ||
| "derivedfrom": null, | ||
| "collections": [ | ||
| "QUICK-LAB", | ||
| "WHOLE-GENOME" | ||
| ] | ||
| } | ||
| ``` | ||
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| ------------------------------------------------------------------------ | ||
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| This work is licensed under a [Creative Commons Attribution-ShareAlike 4.0 International License](http://creativecommons.org/licenses/by-sa/4.0/) | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,27 @@ | ||
| { | ||
| "ampliconsize": 1000, | ||
| "schemeversion": "v1.0.0", | ||
| "schemename": "marv-2023", | ||
| "primer_bed_md5": "456f574691dac1568438289bc14103a1", | ||
| "reference_fasta_md5": "1cd0d4df77e6b300f9328aa5359998ea", | ||
| "status": "draft", | ||
| "citations": [], | ||
| "authors": [ | ||
| "Chris Kent", | ||
| "Quick Lab" | ||
| ], | ||
| "algorithmversion": "primaldigest:0.1.0", | ||
| "species": [ | ||
| 3052505 | ||
| ], | ||
| "license": "CC BY-SA 4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v1.3.0", | ||
| "articbedversion": "v3.0", | ||
| "description": "A scheme generated in response to the Marburg virus outbreak, currently (2023) reported in Equatorial Guinea and Cameroon", | ||
| "derivedfrom": null, | ||
| "collections": [ | ||
| "QUICK-LAB", | ||
| "WHOLE-GENOME" | ||
| ] | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,138 @@ | ||
| MT586762.1 50 80 MARV-2023_1_LEFT_0 1 + AGAATATTAACATTGACATTGAGACTTGTC | ||
| MT586762.1 1046 1067 MARV-2023_1_RIGHT_0 1 - ACTGTTCGCCAACATTGACAC | ||
| MT586762.1 1046 1067 MARV-2023_1_RIGHT_1 1 - ATTGTTCGCCGACATTGACAC | ||
| MT586762.1 1046 1070 MARV-2023_1_RIGHT_2 1 - GATATTGTTCGCCAACATTGACAC | ||
| MT586762.1 980 1002 MARV-2023_2_LEFT_0 2 + GACTCTATCCTCAGCTCTCAGC | ||
| MT586762.1 979 1002 MARV-2023_2_LEFT_1 2 + GGACTCTATCCTCAGCTTTCAGC | ||
| MT586762.1 1903 1925 MARV-2023_2_RIGHT_0 2 - CCTGAGGAGCAGATGGTGAAGA | ||
| MT586762.1 1903 1924 MARV-2023_2_RIGHT_1 2 - CTGAGGAGCAGATGGTGAAGT | ||
| MT586762.1 1903 1923 MARV-2023_2_RIGHT_2 2 - TGAGGAGCAGACGGTGAAGA | ||
| MT586762.1 1232 1257 MARV-2023_3_LEFT_0 1 + TCAGCCAGAAACGAGAAAAATTAGC | ||
| MT586762.1 2153 2178 MARV-2023_3_RIGHT_0 1 - GCAACATGTCTCCGTTCATCAAATG | ||
| MT586762.1 2153 2178 MARV-2023_3_RIGHT_1 1 - GCAACATGTCTCCTTTCATCAAATG | ||
| MT586762.1 2096 2120 MARV-2023_4_LEFT_0 2 + AGGAATACCAAAACCCTGTCTCAG | ||
| MT586762.1 2092 2120 MARV-2023_4_LEFT_1 2 + ATAGAAGAATACCAAAATCCTGTCTCAG | ||
| MT586762.1 2095 2120 MARV-2023_4_LEFT_2 2 + GAGGAATACCAAAATCCTGTCTCAG | ||
| MT586762.1 2092 2120 MARV-2023_4_LEFT_3 2 + GTAGAAGAATACCAAAATCCTGTCTCAG | ||
| MT586762.1 3086 3109 MARV-2023_4_RIGHT_0 2 - CGCCTTTGACATTAGACAAGGAC | ||
| MT586762.1 3086 3108 MARV-2023_4_RIGHT_1 2 - GCCTTTGACATTAGACAAGGGC | ||
| MT586762.1 3086 3108 MARV-2023_4_RIGHT_2 2 - GCCTTTGACATTAGACGAGGGC | ||
| MT586762.1 3035 3065 MARV-2023_5_LEFT_0 1 + AGAAGTTATACAAGAGAAGAAAACCAAAAG | ||
| MT586762.1 3038 3065 MARV-2023_5_LEFT_1 1 + AGCTATACAAGAGAAGGAAACCAAAAG | ||
| MT586762.1 3036 3065 MARV-2023_5_LEFT_2 1 + GAAGCTATACAAGAGAAGAAAACCAAAAG | ||
| MT586762.1 3036 3065 MARV-2023_5_LEFT_3 1 + GAAGTTATACAAGAGAAGGAAACCAAAAG | ||
| MT586762.1 3039 3065 MARV-2023_5_LEFT_4 1 + GCCATACAAGAGAAGAAAACCAAAAG | ||
| MT586762.1 3039 3065 MARV-2023_5_LEFT_5 1 + GCTACACAAGAGAAGAAAACCAAAAG | ||
| MT586762.1 3971 3999 MARV-2023_5_RIGHT_0 1 - AAATGTTTAGTGTCTTTGTATCAACTCG | ||
| MT586762.1 3971 4001 MARV-2023_5_RIGHT_1 1 - TGAAATGTTTAGTGTCTTTGTATCAACTTG | ||
| MT586762.1 3971 3996 MARV-2023_5_RIGHT_2 1 - TGTTTAGTGTCTTTGTCTCAACTCG | ||
| MT586762.1 3881 3906 MARV-2023_6_LEFT_0 2 + GGGTCTGTGTTTATTCATCTGAGCA | ||
| MT586762.1 4880 4904 MARV-2023_6_RIGHT_0 2 - ACTGGGTGATTGTATAGCTGTCTG | ||
| MT586762.1 4880 4902 MARV-2023_6_RIGHT_1 2 - TGGGTGATTGTATAGCTGCCTG | ||
| MT586762.1 4828 4857 MARV-2023_7_LEFT_0 1 + ATTATGAGCAATTTCGAATATCCTTTAGC | ||
| MT586762.1 4830 4857 MARV-2023_7_LEFT_1 1 + CATGAGCAATTTCGAATATCCTTTAGC | ||
| MT586762.1 4826 4857 MARV-2023_7_LEFT_2 1 + GGATTATGAGCAATTTTGAATATCCTTTAGC | ||
| MT586762.1 4829 4857 MARV-2023_7_LEFT_3 1 + TTATGAGCAATTTTGAATACCCTTTAGC | ||
| MT586762.1 5824 5851 MARV-2023_7_RIGHT_0 1 - ACTCTTACCTGGCAATTAATGTTCTTC | ||
| MT586762.1 5824 5854 MARV-2023_7_RIGHT_1 1 - ATCACTTTTACCCAGTAATTAATGTTCTTC | ||
| MT586762.1 5824 5852 MARV-2023_7_RIGHT_2 1 - CACTTTTACCCAGCAATTAATGTTCTTC | ||
| MT586762.1 5824 5849 MARV-2023_7_RIGHT_3 1 - TCTTACCCGGCAATTAATGTTCTTC | ||
| MT586762.1 5775 5803 MARV-2023_8_LEFT_0 2 + AAACTCAACTGATGATGATATTCCTTCT | ||
| MT586762.1 5777 5803 MARV-2023_8_LEFT_1 2 + ACTCAACTGACGATAATACTCCTTCT | ||
| MT586762.1 5777 5803 MARV-2023_8_LEFT_2 2 + ACTCAACTGATGATGACATTCCTTCT | ||
| MT586762.1 5777 5803 MARV-2023_8_LEFT_3 2 + ACTCAACTGATGATGATGTTCCTTCT | ||
| MT586762.1 5775 5803 MARV-2023_8_LEFT_4 2 + CAACCCAACTGATAATGATATTCCTTCT | ||
| MT586762.1 5775 5803 MARV-2023_8_LEFT_5 2 + CAACTCAATTGACGATAATACTCCTTCT | ||
| MT586762.1 5772 5803 MARV-2023_8_LEFT_6 2 + GGTCAACTTAACTGATAATGATATTCCTTCT | ||
| MT586762.1 5773 5803 MARV-2023_8_LEFT_7 2 + GTCAACTCAACTGATAATGATATTCCTTCT | ||
| MT586762.1 6714 6737 MARV-2023_8_RIGHT_0 2 - AGGTCCTCATCATCACTGTTTGG | ||
| MT586762.1 6714 6737 MARV-2023_8_RIGHT_1 2 - AGGTCCTCATCATCACTGTTTGT | ||
| MT586762.1 6714 6738 MARV-2023_8_RIGHT_2 2 - GAGGTCCTCATCATCATTGTTTGG | ||
| MT586762.1 6714 6736 MARV-2023_8_RIGHT_3 2 - GGTCCTCATCATCACTGCTTGG | ||
| MT586762.1 6714 6736 MARV-2023_8_RIGHT_4 2 - GGTCCTCATCATCGCTGTTTGG | ||
| MT586762.1 6714 6736 MARV-2023_8_RIGHT_5 2 - GGTCTTCGTCATCACTGTTTGG | ||
| MT586762.1 6714 6739 MARV-2023_8_RIGHT_6 2 - TGAGGTCCTCATCATCACTATTTGG | ||
| MT586762.1 6600 6623 MARV-2023_9_LEFT_0 1 + ACAAAGAACCAAACATGTGCTCC | ||
| MT586762.1 6600 6623 MARV-2023_9_LEFT_1 1 + ACGAAGAATCAAACATGTGCTCC | ||
| MT586762.1 7593 7617 MARV-2023_9_RIGHT_0 1 - CAACCTGCAGACCAAATTGTTTTG | ||
| MT586762.1 7593 7620 MARV-2023_9_RIGHT_1 1 - CCTCAACCTGCAAACCAAATTATTTTG | ||
| MT586762.1 7593 7618 MARV-2023_9_RIGHT_2 1 - TCAGCCTGCAAACCAAATTATTTTG | ||
| MT586762.1 7549 7572 MARV-2023_10_LEFT_0 2 + GCCCTGGAATCGAAGGACTTTAT | ||
| MT586762.1 7549 7572 MARV-2023_10_LEFT_1 2 + GCCCTGGAATTGAAGGACTTTAC | ||
| MT586762.1 7549 7572 MARV-2023_10_LEFT_2 2 + GCCCTGGGATCGAAGGACTTTAT | ||
| MT586762.1 8544 8570 MARV-2023_10_RIGHT_0 2 - AACAGATCAGATTTTAGGCGGATAAG | ||
| MT586762.1 8544 8570 MARV-2023_10_RIGHT_1 2 - AACGGATCAGATTTTAGGCTGATAAG | ||
| MT586762.1 8544 8573 MARV-2023_10_RIGHT_2 2 - CCTGACGGATCATATTTTAAGCTGATAAG | ||
| MT586762.1 8544 8575 MARV-2023_10_RIGHT_3 2 - GACCTGATGAATCATATTTTAAGCTGATAAG | ||
| MT586762.1 8544 8571 MARV-2023_10_RIGHT_4 2 - TGACGGATCATATTTTGAGCTGATAAG | ||
| MT586762.1 8489 8515 MARV-2023_11_LEFT_0 1 + AAATCATAAGGAAAGATGAGCCACTT | ||
| MT586762.1 8490 8515 MARV-2023_11_LEFT_1 1 + AACCATAAGGAAAAATGAGCCACTT | ||
| MT586762.1 8489 8515 MARV-2023_11_LEFT_2 1 + AATTCATAAGGAAAAATGAGCCTCCT | ||
| MT586762.1 8488 8515 MARV-2023_11_LEFT_3 1 + CAAATCATAAGGAAAAATGAGCCACTT | ||
| MT586762.1 8487 8515 MARV-2023_11_LEFT_4 1 + GCAAATCATAAGGAAAGATAAGCCACTT | ||
| MT586762.1 8487 8515 MARV-2023_11_LEFT_5 1 + GCAAATTATAAGGAAAAATGAGCCACTT | ||
| MT586762.1 9477 9503 MARV-2023_11_RIGHT_0 1 - CCATTTTGGTCTTGAGGGAGATTTTC | ||
| MT586762.1 9477 9499 MARV-2023_11_RIGHT_1 1 - TTTGGTCTTGCGGGAGATTTTC | ||
| MT586762.1 9429 9456 MARV-2023_12_LEFT_0 2 + ACGAATAGATCTTTGATCAACACCATG | ||
| MT586762.1 9430 9456 MARV-2023_12_LEFT_1 2 + CGAATAGATCCTTGATCAACACCATG | ||
| MT586762.1 10418 10444 MARV-2023_12_RIGHT_0 2 - AGAGATGGGAGAATAGATTCCTTGTT | ||
| MT586762.1 10418 10442 MARV-2023_12_RIGHT_1 2 - AGGTGGGAGAATAGATTCCTTGTT | ||
| MT586762.1 10362 10391 MARV-2023_13_LEFT_0 1 + GGAATGACATTGTTGCATCATTTAAAGTC | ||
| MT586762.1 10363 10391 MARV-2023_13_LEFT_1 1 + GGATGACATTGTTGCATCATTTAAAGTC | ||
| MT586762.1 11334 11356 MARV-2023_13_RIGHT_0 1 - AATATGGCAGCATGTGAAACCC | ||
| MT586762.1 11334 11360 MARV-2023_13_RIGHT_1 1 - AGTAAATATGGCAGCATATGAAACCC | ||
| MT586762.1 11334 11356 MARV-2023_13_RIGHT_2 1 - AGTATGGCAGCATTTGAAACCC | ||
| MT586762.1 11334 11356 MARV-2023_13_RIGHT_3 1 - AGTCTGGCAGCATTTGAAATCC | ||
| MT586762.1 11334 11355 MARV-2023_13_RIGHT_4 1 - GTCTGGCAGCATTTGAAACCC | ||
| MT586762.1 11334 11355 MARV-2023_13_RIGHT_5 1 - GTTTAGCAGCCTGTGAAACCC | ||
| MT586762.1 11134 11163 MARV-2023_14_LEFT_0 2 + GCTGTTCCTATAATCTGATGGTGAAAGTA | ||
| MT586762.1 11134 11163 MARV-2023_14_LEFT_1 2 + GCTGTTCCTATAATCTGATGGTGATAGTA | ||
| MT586762.1 11134 11163 MARV-2023_14_LEFT_2 2 + GCTGTTCCTATAATCTGATTGTGAGATTA | ||
| MT586762.1 12126 12147 MARV-2023_14_RIGHT_0 2 - GGGTCAAGTTTTGGTCACGGT | ||
| MT586762.1 12126 12146 MARV-2023_14_RIGHT_1 2 - GGTCAGGTTTTGGTCACGGT | ||
| MT586762.1 12061 12091 MARV-2023_15_LEFT_0 1 + AGTAAAAACAATAATCCGAAATGCTGTAAG | ||
| MT586762.1 12063 12091 MARV-2023_15_LEFT_1 1 + TGAAAACAATAATCCGAAATGCTGTAAG | ||
| MT586762.1 13005 13031 MARV-2023_15_RIGHT_0 1 - CTTTGATTGAAATCTAACAGGAGGGT | ||
| MT586762.1 13005 13029 MARV-2023_15_RIGHT_1 1 - TTGACTGAAATCTAACAGGAGGGT | ||
| MT586762.1 12959 12983 MARV-2023_16_LEFT_0 2 + CAGGAGTGTTGGGATAGTGTCTTT | ||
| MT586762.1 12961 12983 MARV-2023_16_LEFT_1 2 + GGAGTGTTGGGACAGTGTCTTC | ||
| MT586762.1 12961 12983 MARV-2023_16_LEFT_2 2 + GGAGTGTTGGGACAGTGTTTTC | ||
| MT586762.1 13866 13893 MARV-2023_16_RIGHT_0 2 - CAAAATAAATGAACCCTGAATGGACAA | ||
| MT586762.1 13762 13789 MARV-2023_17_LEFT_0 1 + CGATTATCAAGAGAACGAAGCTGAATT | ||
| MT586762.1 13763 13789 MARV-2023_17_LEFT_1 1 + GATTATCAAGAGAACGAGGCTGAATT | ||
| MT586762.1 13762 13789 MARV-2023_17_LEFT_2 1 + TGATTATCAAGAGAACGAAGCTGAATT | ||
| MT586762.1 14760 14785 MARV-2023_17_RIGHT_0 1 - GACTCAGATAAATCATCGTCCAGTG | ||
| MT586762.1 14760 14786 MARV-2023_17_RIGHT_1 1 - GGACTCAGATAAATCATCGTCCAATG | ||
| MT586762.1 14686 14715 MARV-2023_18_LEFT_0 2 + AGAAGGAACAATGTTGATGAAATTAAGAG | ||
| MT586762.1 14689 14715 MARV-2023_18_LEFT_1 2 + AGGGACAATGTTGATGAAATTAAGGG | ||
| MT586762.1 15616 15640 MARV-2023_18_RIGHT_0 2 - AATAGGTATTCAGATGGCACATGC | ||
| MT586762.1 15616 15637 MARV-2023_18_RIGHT_1 2 - AGGTATTCGGACGGTACATGC | ||
| MT586762.1 15554 15579 MARV-2023_19_LEFT_0 1 + GCTAAATTGTCGTCAGCATCAAATG | ||
| MT586762.1 15553 15579 MARV-2023_19_LEFT_1 1 + TGCTAAACTGTCGTCATCATCAAATG | ||
| MT586762.1 15552 15579 MARV-2023_19_LEFT_2 1 + TTGCTAAATTGTCGTCAGTATCAAATG | ||
| MT586762.1 15552 15579 MARV-2023_19_LEFT_3 1 + TTGCTAAATTGTCGTCATCATCAAATG | ||
| MT586762.1 16455 16482 MARV-2023_19_RIGHT_0 1 - CCCTCCAATAATTAAGGCTTGCATAAT | ||
| MT586762.1 16455 16483 MARV-2023_19_RIGHT_1 1 - TCTCTCCAATAATTAAGGCTTGCATAAT | ||
| MT586762.1 16405 16431 MARV-2023_20_LEFT_0 2 + AGTTGATAGCTTTTGGGTTTATCCAA | ||
| MT586762.1 16404 16431 MARV-2023_20_LEFT_1 2 + CAATTGATTGCTTTTGGGTTTATCCAA | ||
| MT586762.1 16409 16431 MARV-2023_20_LEFT_2 2 + GGCAGCTTTTGGGTCTATCCAA | ||
| MT586762.1 16408 16431 MARV-2023_20_LEFT_3 2 + TGACAGCTTTTGGGTCTATCCAA | ||
| MT586762.1 16407 16431 MARV-2023_20_LEFT_4 2 + TTGATGGCTTTTGGGTTTATCCAA | ||
| MT586762.1 17345 17368 MARV-2023_20_RIGHT_0 2 - TTCCACTTCAAAAGTAACCGAGC | ||
| MT586762.1 17293 17317 MARV-2023_21_LEFT_0 1 + ACCAGGTGAATTGAAAAAGGCAAT | ||
| MT586762.1 17294 17317 MARV-2023_21_LEFT_1 1 + CCAGGTGAATTGAGAAAGGCAAT | ||
| MT586762.1 17294 17317 MARV-2023_21_LEFT_2 1 + CCAGGTGAGTTGAGAAAGGCAAT | ||
| MT586762.1 17291 17317 MARV-2023_21_LEFT_3 1 + CCTCCAGGTAAATTGAAAAAGGCAAT | ||
| MT586762.1 17292 17317 MARV-2023_21_LEFT_4 1 + CTCCAGGTGAATTAAGAAAGGCAAT | ||
| MT586762.1 17293 17317 MARV-2023_21_LEFT_5 1 + TCCAGGTGAATTGAAAAAGGCAAT | ||
| MT586762.1 18279 18304 MARV-2023_21_RIGHT_0 1 - ACTGAATGCATATTAGGAAGGGTCT | ||
| MT586762.1 18279 18307 MARV-2023_21_RIGHT_1 1 - CATACTGAATGCATATTAGGAAGGATCT | ||
| MT586762.1 18279 18302 MARV-2023_21_RIGHT_2 1 - TGAATGCATATTGGGAAGGGTCT | ||
| MT586762.1 18045 18070 MARV-2023_22_LEFT_0 2 + CATTCAGTGAAGGAAAGGCTCTTTT | ||
| MT586762.1 18954 18980 MARV-2023_22_RIGHT_0 2 - ACTTGTCATCAGAGAAAACTTAACGT | ||
| MT586762.1 18954 18980 MARV-2023_22_RIGHT_1 2 - ACTTGTCATCAGAGAAAATGTAACGT | ||
| MT586762.1 18954 18980 MARV-2023_22_RIGHT_2 2 - ACTTGTCATCGAGAAAATGTAACGT | ||
| MT586762.1 18954 18980 MARV-2023_22_RIGHT_3 2 - ACTTGTCATCTGAGAAAATGTAACGT | ||
| MT586762.1 18954 18979 MARV-2023_22_RIGHT_4 2 - CTTGTCATCAGAGAAAACATGACGT | ||
| MT586762.1 18954 18979 MARV-2023_22_RIGHT_5 2 - CTTGTCATCAGAGAAAACGTAACGT | ||
| MT586762.1 18954 18982 MARV-2023_22_RIGHT_6 2 - TCACTTATCATCAGAGAAAATGTAACGT |
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