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Updated collections for hbv/600 and hbv/500
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,27 +1,36 @@ | ||
| { | ||
| "ampliconsize": 500, | ||
| "schemeversion": "v1.0.0", | ||
| "schemename": "hbv", | ||
| "primer_bed_md5": "c49dd3634bb727c6e04dba56236c5352", | ||
| "reference_fasta_md5": "7612eab3e2389215206ae17187da1791", | ||
| "status": "deprecated", | ||
| "citations": [], | ||
| "authors": ["quick lab", "artic network"], | ||
| "algorithmversion": "primaldigest:1.1.2", | ||
| "species": [10407], | ||
| "license": "CC-BY-4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v2.0.0", | ||
| "articbedversion": "v3.0", | ||
| "collections": ["QUICK-LAB", "WHOLE-GENOME"], | ||
| "links": { | ||
| "protocols": [], | ||
| "validation": [], | ||
| "homepage": [], | ||
| "vendors": [], | ||
| "misc": [] | ||
| }, | ||
| "description": "Schemes generated for the Hepatitis B virus (hbv)", | ||
| "derivedfrom": null, | ||
| "contactinfo": null | ||
| } | ||
| "ampliconsize": 500, | ||
| "schemeversion": "v1.0.0", | ||
| "schemename": "hbv", | ||
| "primer_bed_md5": "c49dd3634bb727c6e04dba56236c5352", | ||
| "reference_fasta_md5": "7612eab3e2389215206ae17187da1791", | ||
| "status": "deprecated", | ||
| "citations": [], | ||
| "authors": [ | ||
| "quick lab", | ||
| "artic network" | ||
| ], | ||
| "algorithmversion": "primaldigest:1.1.2", | ||
| "species": [ | ||
| 10407 | ||
| ], | ||
| "license": "CC-BY-4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v2.0.0", | ||
| "articbedversion": "v3.0", | ||
| "collections": [ | ||
| "QUICK-LAB", | ||
| "WHOLE-GENOME", | ||
| "CLINICAL-ISOLATES" | ||
| ], | ||
| "links": { | ||
| "protocols": [], | ||
| "validation": [], | ||
| "homepage": [], | ||
| "vendors": [], | ||
| "misc": [] | ||
| }, | ||
| "description": "Schemes generated for the Hepatitis B virus (hbv)", | ||
| "derivedfrom": null, | ||
| "contactinfo": null | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,27 +1,36 @@ | ||
| { | ||
| "ampliconsize": 500, | ||
| "schemeversion": "v1.1.0", | ||
| "schemename": "hbv", | ||
| "primer_bed_md5": "4700089ebc8db0b88296512dcfc47818", | ||
| "reference_fasta_md5": "7612eab3e2389215206ae17187da1791", | ||
| "status": "deprecated", | ||
| "citations": [], | ||
| "authors": ["quick lab", "artic network"], | ||
| "algorithmversion": "primaldigest:1.1.3", | ||
| "species": [10407], | ||
| "license": "CC-BY-4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v2.0.0", | ||
| "articbedversion": "v3.0", | ||
| "collections": ["QUICK-LAB", "WHOLE-GENOME"], | ||
| "links": { | ||
| "protocols": [], | ||
| "validation": [], | ||
| "homepage": [], | ||
| "vendors": [], | ||
| "misc": [] | ||
| }, | ||
| "description": "Schemes generated for the Hepatitis B virus (hbv)", | ||
| "derivedfrom": null, | ||
| "contactinfo": null | ||
| } | ||
| "ampliconsize": 500, | ||
| "schemeversion": "v1.1.0", | ||
| "schemename": "hbv", | ||
| "primer_bed_md5": "4700089ebc8db0b88296512dcfc47818", | ||
| "reference_fasta_md5": "7612eab3e2389215206ae17187da1791", | ||
| "status": "deprecated", | ||
| "citations": [], | ||
| "authors": [ | ||
| "quick lab", | ||
| "artic network" | ||
| ], | ||
| "algorithmversion": "primaldigest:1.1.3", | ||
| "species": [ | ||
| 10407 | ||
| ], | ||
| "license": "CC-BY-4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v2.0.0", | ||
| "articbedversion": "v3.0", | ||
| "collections": [ | ||
| "CLINICAL-ISOLATES", | ||
| "QUICK-LAB", | ||
| "WHOLE-GENOME" | ||
| ], | ||
| "links": { | ||
| "protocols": [], | ||
| "validation": [], | ||
| "homepage": [], | ||
| "vendors": [], | ||
| "misc": [] | ||
| }, | ||
| "description": "Schemes generated for the Hepatitis B virus (hbv)", | ||
| "derivedfrom": null, | ||
| "contactinfo": null | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,27 +1,37 @@ | ||
| { | ||
| "ampliconsize": 600, | ||
| "schemeversion": "v2.0.0", | ||
| "schemename": "hbv", | ||
| "primer_bed_md5": "b87ea41cdc94f223cd4cc836f6d333eb", | ||
| "reference_fasta_md5": "b01f2e0109981e19316692538f57b4d9", | ||
| "status": "tested", | ||
| "citations": [], | ||
| "authors": ["Dr Sheila Lumley", "Chris Kent", "Quick Lab"], | ||
| "algorithmversion": "primalscheme3:1.1.3", | ||
| "species": [10407], | ||
| "license": "CC BY-SA 4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v2.0.0", | ||
| "articbedversion": "v3.0", | ||
| "collections": ["QUICK-LAB", "WHOLE-GENOME"], | ||
| "links": { | ||
| "protocols": [], | ||
| "validation": [], | ||
| "homepage": [], | ||
| "vendors": [], | ||
| "misc": [] | ||
| }, | ||
| "description": "A 600bp high overlap scheme for HBV. Using phylogenetic downsampling to reduce bias in under represented HBV Clades", | ||
| "derivedfrom": null, | ||
| "contactinfo": null | ||
| } | ||
| "ampliconsize": 600, | ||
| "schemeversion": "v2.0.0", | ||
| "schemename": "hbv", | ||
| "primer_bed_md5": "b87ea41cdc94f223cd4cc836f6d333eb", | ||
| "reference_fasta_md5": "b01f2e0109981e19316692538f57b4d9", | ||
| "status": "tested", | ||
| "citations": [], | ||
| "authors": [ | ||
| "Dr Sheila Lumley", | ||
| "Chris Kent", | ||
| "Quick Lab" | ||
| ], | ||
| "algorithmversion": "primalscheme3:1.1.3", | ||
| "species": [ | ||
| 10407 | ||
| ], | ||
| "license": "CC BY-SA 4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v2.0.0", | ||
| "articbedversion": "v3.0", | ||
| "collections": [ | ||
| "WHOLE-GENOME", | ||
| "QUICK-LAB", | ||
| "CLINICAL-ISOLATES" | ||
| ], | ||
| "links": { | ||
| "protocols": [], | ||
| "validation": [], | ||
| "homepage": [], | ||
| "vendors": [], | ||
| "misc": [] | ||
| }, | ||
| "description": "A 600bp high overlap scheme for HBV. Using phylogenetic downsampling to reduce bias in under represented HBV Clades", | ||
| "derivedfrom": null, | ||
| "contactinfo": null | ||
| } |