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| # artic-marv 1200bp v1.0.0 | ||
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| [primalscheme labs](https://labs.primalscheme.com/detail/artic-marv/1200/v1.0.0) | ||
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| ## Description | ||
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| Genomes for MARV and RAVV were downloaded from Genbank, aligned using MAFFT and alignment was used as the input for primalscheme3. | ||
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| ## Overviews | ||
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|  | ||
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| ## Details | ||
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| ```json | ||
| { | ||
| "ampliconsize": 1200, | ||
| "schemeversion": "v1.0.0", | ||
| "schemename": "artic-marv", | ||
| "primer_bed_md5": "481f2b61310fe3af58e6772e292822d7", | ||
| "reference_fasta_md5": "99fef270892d906f609712ec8d613381", | ||
| "status": "draft", | ||
| "citations": [], | ||
| "authors": [ | ||
| "ARTIC network", | ||
| "Quick Lab" | ||
| ], | ||
| "algorithmversion": "primalscheme3", | ||
| "species": [ | ||
| 3052505 | ||
| ], | ||
| "license": "CC BY-SA 4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v2.0.0", | ||
| "articbedversion": "v3.0", | ||
| "collections": [ | ||
| "ARTIC", | ||
| "WHOLE-GENOME", | ||
| "QUICK-LAB" | ||
| ], | ||
| "links": { | ||
| "protocols": [], | ||
| "validation": [], | ||
| "homepage": [], | ||
| "vendors": [], | ||
| "misc": [] | ||
| }, | ||
| "refselect": null, | ||
| "description": "Genomes for MARV and RAVV were downloaded from Genbank, aligned using MAFFT and alignment was used as the input for primalscheme3.", | ||
| "derivedfrom": null, | ||
| "contactinfo": null | ||
| } | ||
| ``` | ||
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| ------------------------------------------------------------------------ | ||
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| This work is licensed under a [Creative Commons Attribution-ShareAlike 4.0 International License](http://creativecommons.org/licenses/by-sa/4.0/) | ||
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|  |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,37 @@ | ||
| { | ||
| "ampliconsize": 1200, | ||
| "schemeversion": "v1.0.0", | ||
| "schemename": "artic-marv", | ||
| "primer_bed_md5": "481f2b61310fe3af58e6772e292822d7", | ||
| "reference_fasta_md5": "99fef270892d906f609712ec8d613381", | ||
| "status": "draft", | ||
| "citations": [], | ||
| "authors": [ | ||
| "ARTIC network", | ||
| "Quick Lab" | ||
| ], | ||
| "algorithmversion": "primalscheme3", | ||
| "species": [ | ||
| 3052505 | ||
| ], | ||
| "license": "CC BY-SA 4.0", | ||
| "primerclass": "primerschemes", | ||
| "infoschema": "v2.0.0", | ||
| "articbedversion": "v3.0", | ||
| "collections": [ | ||
| "ARTIC", | ||
| "WHOLE-GENOME", | ||
| "QUICK-LAB" | ||
| ], | ||
| "links": { | ||
| "protocols": [], | ||
| "validation": [], | ||
| "homepage": [], | ||
| "vendors": [], | ||
| "misc": [] | ||
| }, | ||
| "refselect": null, | ||
| "description": "Genomes for MARV and RAVV were downloaded from Genbank, aligned using MAFFT and alignment was used as the input for primalscheme3.", | ||
| "derivedfrom": null, | ||
| "contactinfo": null | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,128 @@ | ||
| #artic-bed-version v3.0 | ||
| NC_001608.3 101 133 2ee06dc7_1_LEFT_1 1 + AGATGGATTTACATAGTTTGCTAGAATTAGGT | ||
| NC_001608.3 101 133 2ee06dc7_1_LEFT_2 1 + AGATGGATTTACATAGTTTGTTAGAATTGGGT | ||
| NC_001608.3 103 133 2ee06dc7_1_LEFT_3 1 + ATGGATTTACATAGTTTGTTAGAGTTGGGT | ||
| NC_001608.3 105 133 2ee06dc7_1_LEFT_4 1 + GGATTTACATAGCTTGTTAGAGTTGGGT | ||
| NC_001608.3 104 133 2ee06dc7_1_LEFT_5 1 + TGGACTTACATAGTTTGTTAGAGTTGGGT | ||
| NC_001608.3 1481 1505 2ee06dc7_1_RIGHT_1 1 - CGTTCAGCAGTGCAAATGGATCAT | ||
| NC_001608.3 1481 1506 2ee06dc7_1_RIGHT_2 1 - TCATTCAGCAGTGCAAATGGATCAT | ||
| NC_001608.3 1481 1503 2ee06dc7_1_RIGHT_3 1 - TTCAGCAGCGCAAATGGATCAT | ||
| NC_001608.3 1290 1319 2ee06dc7_2_LEFT_1 2 + GGAAGATCAGGGATTTAAACAATCACAGA | ||
| NC_001608.3 1296 1319 2ee06dc7_2_LEFT_2 2 + TCAGGGGTTCAAACAATCGCAGA | ||
| NC_001608.3 2669 2697 2ee06dc7_2_RIGHT_1 2 - ACTCCAAACCAGTGTACTTGACATTCTA | ||
| NC_001608.3 2669 2697 2ee06dc7_2_RIGHT_2 2 - ACTCTGAACCAGTAGACTTGACATTCTA | ||
| NC_001608.3 2669 2698 2ee06dc7_2_RIGHT_3 2 - GACTCCAAACTTGTAGACTTGACATTCTA | ||
| NC_001608.3 2669 2690 2ee06dc7_2_RIGHT_4 2 - GCCAACAAACTCGGCGTTTCA | ||
| NC_001608.3 2669 2695 2ee06dc7_2_RIGHT_5 2 - TCCAAACCAGTGGACTTGACATTCTA | ||
| NC_001608.3 2417 2447 2ee06dc7_3_LEFT_1 1 + CCATAACGATACAACTATAAACCTCCGTAC | ||
| NC_001608.3 2417 2447 2ee06dc7_3_LEFT_2 1 + CCATGATGATACAACTATAAACCTCCGTAC | ||
| NC_001608.3 2416 2447 2ee06dc7_3_LEFT_3 1 + GCCATAATGATACAACTATAAACCTCCGTAC | ||
| NC_001608.3 2416 2447 2ee06dc7_3_LEFT_4 1 + GCTATAATGATACAACTACAAACCTCCGTAC | ||
| NC_001608.3 2416 2447 2ee06dc7_3_LEFT_5 1 + GCTATAATGATACAACTACGAACCTCCATAC | ||
| NC_001608.3 2415 2447 2ee06dc7_3_LEFT_6 1 + TGCTACGATAATACAACTACAAACCTCTTTAC | ||
| NC_001608.3 2415 2447 2ee06dc7_3_LEFT_7 1 + TGCTATAATGATACAACTACAAACCTCTGTAC | ||
| NC_001608.3 2415 2447 2ee06dc7_3_LEFT_8 1 + TGCTATAATGATACAACTACAAATCTCCGTAC | ||
| NC_001608.3 3778 3809 2ee06dc7_3_RIGHT_1 1 - AGTTTTTAACTTTTATTACTGGAGGAACTGC | ||
| NC_001608.3 3778 3803 2ee06dc7_3_RIGHT_2 1 - TGACTCTTATCACTGGAGGAACCAC | ||
| NC_001608.3 3778 3807 2ee06dc7_3_RIGHT_3 1 - TTTTTGACTCTTATCACTGGAGGAACTAC | ||
| NC_001608.3 3645 3676 2ee06dc7_4_LEFT_1 2 + CCTTTCAAAAATTGCTTACAAATCAGGAAAG | ||
| NC_001608.3 3645 3676 2ee06dc7_4_LEFT_2 2 + CCTTTCAAAAATTGCTTACAAGTCAGGAAAA | ||
| NC_001608.3 3649 3676 2ee06dc7_4_LEFT_3 2 + TCAAAGATTGCTTACAAGTCAGGGAAA | ||
| NC_001608.3 4987 5016 2ee06dc7_4_RIGHT_1 2 - ACCATGTTCTGAATAAAAGCTTGATTTCC | ||
| NC_001608.3 4987 5017 2ee06dc7_4_RIGHT_2 2 - CACCATATTCTGAATAAAAGCTTGATTCCC | ||
| NC_001608.3 4987 5018 2ee06dc7_4_RIGHT_3 2 - TCACCATATTCTGAATAAAAGCTTGATTTCC | ||
| NC_001608.3 4987 5012 2ee06dc7_4_RIGHT_4 2 - TGTTTTGGACAAAAGCTTGGTTTCC | ||
| NC_001608.3 4815 4838 2ee06dc7_5_LEFT_1 1 + GCTGCCTCTTGGGATTATGAGCA | ||
| NC_001608.3 4817 4838 2ee06dc7_5_LEFT_2 1 + TGCCTCTTGGGATCATGAGCA | ||
| NC_001608.3 6179 6202 2ee06dc7_5_RIGHT_1 1 - CTTCCCCTTCCGTGTACTCAACA | ||
| NC_001608.3 6179 6205 2ee06dc7_5_RIGHT_2 1 - CTTCCTCCCCTTCTGTATACTCAACA | ||
| NC_001608.3 6179 6206 2ee06dc7_5_RIGHT_3 1 - GCTTCTTCTCCTTCCGTATACTCAACG | ||
| NC_001608.3 6179 6203 2ee06dc7_5_RIGHT_4 1 - TCCTCCCCTTCCGTATACTCAACA | ||
| NC_001608.3 6007 6032 2ee06dc7_6_LEFT_1 2 + AGATAGCCAGTAACAATCAACCCCA | ||
| NC_001608.3 6007 6032 2ee06dc7_6_LEFT_2 2 + AGATAGCCAGTAACATTCAACCCCA | ||
| NC_001608.3 6007 6032 2ee06dc7_6_LEFT_3 2 + AGATAGCTAGTAACAACCAACCCCA | ||
| NC_001608.3 6009 6032 2ee06dc7_6_LEFT_4 2 + ATAGCCAGTAACGATCAACCCCA | ||
| NC_001608.3 6006 6032 2ee06dc7_6_LEFT_5 2 + GAAATTGCTAGTAACAGCCAACCTCA | ||
| NC_001608.3 7386 7414 2ee06dc7_6_RIGHT_1 2 - AAGTTAAACTGATATTAGGGGAGGCATG | ||
| NC_001608.3 7386 7419 2ee06dc7_6_RIGHT_2 2 - AGATAAAGTTAAACTGATATTAGAGGAGGCATG | ||
| NC_001608.3 7386 7419 2ee06dc7_6_RIGHT_3 2 - AGATAAAGTTAAACTGATATTGGAGAATGCATG | ||
| NC_001608.3 7386 7418 2ee06dc7_6_RIGHT_4 2 - GATAAAGTTAAACTGATATTGGAGGATGCATG | ||
| NC_001608.3 7386 7412 2ee06dc7_6_RIGHT_5 2 - GTTAAACTGATATTCGGGGGAGTGTG | ||
| NC_001608.3 7386 7412 2ee06dc7_6_RIGHT_6 2 - GTTAAACTGATATTGGGGGAGGCATG | ||
| NC_001608.3 7261 7284 2ee06dc7_7_LEFT_1 1 + AAGGCGACATGTTCCCTTTTCTG | ||
| NC_001608.3 7262 7284 2ee06dc7_7_LEFT_2 1 + AGGCGACACGTTCCTTTTTCTG | ||
| NC_001608.3 7259 7284 2ee06dc7_7_LEFT_3 1 + GGAAGGCGACATATTCCCTTTTCTG | ||
| NC_001608.3 7259 7284 2ee06dc7_7_LEFT_4 1 + GGAAGGCGACATGTTCCCTTTTCTA | ||
| NC_001608.3 7254 7284 2ee06dc7_7_LEFT_5 1 + TGGAAAGAAGGTGATATATTCCCGTTTTTA | ||
| NC_001608.3 8551 8583 2ee06dc7_7_RIGHT_1 1 - AAGTTTATCACCTGGTAAATTAAAATGTAGGC | ||
| NC_001608.3 8551 8578 2ee06dc7_7_RIGHT_2 1 - CATGACCTAACGGATCAGATTTTAGGC | ||
| NC_001608.3 8551 8580 2ee06dc7_7_RIGHT_3 1 - CCCATGACTTAACGGATCAGATTTTAAGC | ||
| NC_001608.3 8551 8578 2ee06dc7_7_RIGHT_4 1 - CGTGACCTGACGGATCATATTTTAAGC | ||
| NC_001608.3 8551 8575 2ee06dc7_7_RIGHT_5 1 - GACCCAACGGATCAGATTTTAGGC | ||
| NC_001608.3 8551 8581 2ee06dc7_7_RIGHT_6 1 - GCCCATGACTTAACAGATCAGATTTTAAGC | ||
| NC_001608.3 8551 8577 2ee06dc7_7_RIGHT_7 1 - GTGACCTGACGGATCATATTTTGAGC | ||
| NC_001608.3 8280 8316 2ee06dc7_8_LEFT_1 2 + CTCTGAACCTAAGACCATAATAAATATTGGTTAAAG | ||
| NC_001608.3 8280 8316 2ee06dc7_8_LEFT_2 2 + CTCTGAACCTAAGACCATAATAAATATTGGTTAATG | ||
| NC_001608.3 8287 8316 2ee06dc7_8_LEFT_3 2 + CTTGAAGACATAGTTAAGACTGACCGAAA | ||
| NC_001608.3 8289 8316 2ee06dc7_8_LEFT_4 2 + TGAAGACATAGTTAAAACTGGCCGAAA | ||
| NC_001608.3 8289 8316 2ee06dc7_8_LEFT_5 2 + TGAAGACATAGTTAAGACTGGCCGAAA | ||
| NC_001608.3 9660 9690 2ee06dc7_8_RIGHT_1 2 - AGGAAGAATAAAATGATCGTATGAGGCTTG | ||
| NC_001608.3 9660 9690 2ee06dc7_8_RIGHT_2 2 - AGGAAGAATAAAATGGTCATATGAGGCTTG | ||
| NC_001608.3 9660 9689 2ee06dc7_8_RIGHT_3 2 - GGAAGAATAAAATGGTCGTATGAGGCTTG | ||
| NC_001608.3 9660 9688 2ee06dc7_8_RIGHT_4 2 - GGAGAATAAAGTGATCATATGAGGCCTG | ||
| NC_001608.3 9533 9560 2ee06dc7_9_LEFT_1 1 + CCTTGATAAAGGAGGTCAATTCGAAGC | ||
| NC_001608.3 9536 9560 2ee06dc7_9_LEFT_2 1 + TGACAAAGGAGGTCAATTCGAAGC | ||
| NC_001608.3 9536 9560 2ee06dc7_9_LEFT_3 1 + TGACAAAGGGGGTCAATTTGAAGC | ||
| NC_001608.3 10874 10897 2ee06dc7_9_RIGHT_1 1 - CCCTTAGGACTGCTTCAGCTACT | ||
| NC_001608.3 10874 10897 2ee06dc7_9_RIGHT_2 1 - CTCTTAGAACTGCCTCAGCCACT | ||
| NC_001608.3 10874 10899 2ee06dc7_9_RIGHT_3 1 - TTCTCTTAGAACTGCCTCAACCACT | ||
| NC_001608.3 10734 10765 2ee06dc7_10_LEFT_1 2 + AGCAGTATTGAAATAAAATTAACCGGACAAC | ||
| NC_001608.3 10734 10765 2ee06dc7_10_LEFT_2 2 + AGCAGTATTGAAATAAAGTTAACTGGACAAC | ||
| NC_001608.3 10735 10765 2ee06dc7_10_LEFT_3 2 + GCAGTATTGAAATAAAGTTAACTGGGCAAC | ||
| NC_001608.3 12095 12121 2ee06dc7_10_RIGHT_1 2 - ACTCTTAACCCTGGTTTTGAAGCTTG | ||
| NC_001608.3 12095 12120 2ee06dc7_10_RIGHT_2 2 - CCCTTAACCCTGGTTTTGAAGCTTG | ||
| NC_001608.3 12095 12119 2ee06dc7_10_RIGHT_3 2 - CCTCAACCCTGGTTTTGAAGCTTG | ||
| NC_001608.3 12095 12119 2ee06dc7_10_RIGHT_4 2 - CTTTAACCCTGGTTTTGAGGCCTG | ||
| NC_001608.3 12095 12117 2ee06dc7_10_RIGHT_5 2 - TCAGCCCTGGTTTTGAAGCTTG | ||
| NC_001608.3 11963 11993 2ee06dc7_11_LEFT_1 1 + ATAAAAGGACAAAGAGGGTCATTAAGAAGT | ||
| NC_001608.3 11968 11993 2ee06dc7_11_LEFT_2 1 + GGGACAAAGAGGGTCTTTAAGGAGC | ||
| NC_001608.3 13333 13360 2ee06dc7_11_RIGHT_1 1 - ACTATAGCGTTTTCCCCTATACTTGCT | ||
| NC_001608.3 13333 13357 2ee06dc7_11_RIGHT_2 1 - ATGGCATTCTCCCCTATACTTGCT | ||
| NC_001608.3 13333 13354 2ee06dc7_11_RIGHT_3 1 - GCGTTTTCCCCTATGCTTGCT | ||
| NC_001608.3 13192 13217 2ee06dc7_12_LEFT_1 2 + TCGTGTCAGAAATGTCCAAACACTC | ||
| NC_001608.3 13192 13217 2ee06dc7_12_LEFT_2 2 + TCGTGTCAGAAATGTCCAAACACTT | ||
| NC_001608.3 14559 14582 2ee06dc7_12_RIGHT_1 2 - AGCAAATCGGCTCATTACAGGGT | ||
| NC_001608.3 14559 14581 2ee06dc7_12_RIGHT_2 2 - GCAAATCGGCTCATTACGGGGT | ||
| NC_001608.3 14424 14455 2ee06dc7_13_LEFT_1 1 + AAATAATAACGTTCCTTAGACAAACAGTTCG | ||
| NC_001608.3 14428 14455 2ee06dc7_13_LEFT_2 1 + AATAACGTTCCTTAGACAGACAGTTCG | ||
| NC_001608.3 14432 14455 2ee06dc7_13_LEFT_3 1 + ACGTTTCTCAGGCAAACAGTTCG | ||
| NC_001608.3 15799 15821 2ee06dc7_13_RIGHT_1 1 - CCACGCAGCAATAGTCGGAAAG | ||
| NC_001608.3 15799 15824 2ee06dc7_13_RIGHT_2 1 - TGTCCATGCAGCAATAGTTGGAAAG | ||
| NC_001608.3 15649 15682 2ee06dc7_14_LEFT_1 2 + ACCTTTAGATGTAGATTTGAACAAGTATATGGA | ||
| NC_001608.3 15655 15682 2ee06dc7_14_LEFT_2 2 + AGACGTGGATCTGAACAAGTATATGGA | ||
| NC_001608.3 15650 15682 2ee06dc7_14_LEFT_3 2 + CCTTTAGATGTGGATTTGAACAAGTATATGGA | ||
| NC_001608.3 15651 15682 2ee06dc7_14_LEFT_4 2 + CTTTAGATGTGGATCTGAACAAGTATATGGA | ||
| NC_001608.3 15653 15682 2ee06dc7_14_LEFT_5 2 + TTAGATGTGGATTTGAACAAGTACATGGA | ||
| NC_001608.3 17025 17057 2ee06dc7_14_RIGHT_1 2 - AGTTGATGAATATCTAGAGAGTTGTAATGGAC | ||
| NC_001608.3 17025 17051 2ee06dc7_14_RIGHT_2 2 - CAGACACTCAGAAGGTTGCAATAGAC | ||
| NC_001608.3 17025 17053 2ee06dc7_14_RIGHT_3 2 - GATGAATACCTAGAGGATTGTAATGGGC | ||
| NC_001608.3 17025 17056 2ee06dc7_14_RIGHT_4 2 - GTTGATGAATATCTAGAGGGTTGTAATGGAC | ||
| NC_001608.3 17025 17054 2ee06dc7_14_RIGHT_5 2 - TGATGAATACCTAAAGGATTGTAATGGGC | ||
| NC_001608.3 17025 17054 2ee06dc7_14_RIGHT_6 2 - TGATGAATATCTAGAGGATCGTAACGGAC | ||
| NC_001608.3 16894 16920 2ee06dc7_15_LEFT_1 1 + AGATGTACATGAGGACTTTGATGCCT | ||
| NC_001608.3 16897 16920 2ee06dc7_15_LEFT_2 1 + CATGCTTAGGAATTGTGACGCCA | ||
| NC_001608.3 16896 16920 2ee06dc7_15_LEFT_3 1 + GCATGCTTAGAAATTGTGACGCCA | ||
| NC_001608.3 16895 16920 2ee06dc7_15_LEFT_4 1 + GGTGTACATGAGGACTTTGATGCCT | ||
| NC_001608.3 18151 18181 2ee06dc7_15_RIGHT_1 1 - GAGCATATGAAGTGATTTCTCAGATCTAGG | ||
| NC_001608.3 18151 18182 2ee06dc7_15_RIGHT_2 1 - TGAGCAAATAAAGTGATTTCTCAAGTCTAGT | ||
| NC_001608.3 17337 17362 2ee06dc7_16_LEFT_1 2 + GAAGTGGTGCTCGGTTACTTTTGAA | ||
| NC_001608.3 17340 17362 2ee06dc7_16_LEFT_2 2 + GTGGCGCTCGACTACTCTTGAA | ||
| NC_001608.3 17340 17362 2ee06dc7_16_LEFT_3 2 + GTGGTGCTCGGTTACTCCTGAA | ||
| NC_001608.3 18661 18688 2ee06dc7_16_RIGHT_1 2 - AACGTTCAATCACAAGTTAATCTGTGC | ||
| NC_001608.3 18661 18687 2ee06dc7_16_RIGHT_2 2 - ACATCCAATCACAAGTTGATCTGTGC | ||
| NC_001608.3 18661 18681 2ee06dc7_16_RIGHT_3 2 - AGCGGTCAGTTCGGCTATGT | ||
| NC_001608.3 18661 18687 2ee06dc7_16_RIGHT_4 2 - CCGTTCAACCACAAGTTAATCTGTGT | ||
| NC_001608.3 18661 18690 2ee06dc7_16_RIGHT_5 2 - CGAACATCCAATTACAAGTTAATCTGTGC | ||
| NC_001608.3 18661 18690 2ee06dc7_16_RIGHT_6 2 - CGAACGTTCAATCACAAGTTAATCTGTGT | ||
| NC_001608.3 18661 18689 2ee06dc7_16_RIGHT_7 2 - GAACATCCAATCACAAGTTAATCTGTGC | ||
| NC_001608.3 18661 18689 2ee06dc7_16_RIGHT_8 2 - GAACGTTCAATCATAAGTTAATCTGCGC |
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