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backends

backends #1833

Workflow file for this run

on:
push:
branches:
- main
- master
pull_request:
branches:
- main
- master
schedule:
- cron: '0 8 * * *'
name: backends
jobs:
matrix:
runs-on: ubuntu-latest
outputs:
matrix: ${{ steps.set-matrix.outputs.matrix }}
steps:
- uses: actions/checkout@v3
# https://github.blog/changelog/2020-04-15-github-actions-new-workflow-features/
- id: set-matrix
run: |
matrix=$((
echo '{ "package" : ['
sed -n "/^REVDEP *:= */ { s///; p }" revdep-dev/Makefile | sed -r 's/ odbc-[^ ]*//g' | sed 's/ /,\n/g' | sed -r 's/^([^,]*)(,?)$/"\1"\2/'
echo " ]}"
) | jq -c .)
echo $matrix
echo $matrix | jq .
echo "matrix=$matrix" >> $GITHUB_OUTPUT
check-matrix:
runs-on: ubuntu-latest
needs: matrix
steps:
- name: Install json2yaml
run: |
sudo npm install -g json2yaml
- name: Check matrix definition
run: |
matrix='${{ needs.matrix.outputs.matrix }}'
echo $matrix
echo $matrix | jq .
echo $matrix | json2yaml
backend:
needs: matrix
# Need Ubuntu 20.04 for remotes::system_requirements()
runs-on: ubuntu-20.04
strategy:
fail-fast: false
matrix: ${{fromJson(needs.matrix.outputs.matrix)}}
name: ${{ matrix.package }}
env:
RSPM: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- name: Check rate limits
run: |
curl -s --header "authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" https://api.github.com/rate_limit
shell: bash
- uses: actions/checkout@v3
- uses: ./.github/workflows/install
with:
install-r: false
cache-version: backends-${{ matrix.package }}
needs: check
extra-packages: "any::pkgbuild any::remotes decor ."
token: ${{ secrets.GITHUB_TOKEN }}
- name: Clone backend
run: |
make -C revdep-dev ${{ matrix.package }}
- name: Install system dependencies
if: runner.os == 'Linux'
# "22.04" fails here
run: |
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04", path = "revdep-dev/${{ matrix.package }}"))')
- name: Install package and dependencies
run: |
remotes::install_local("revdep-dev/${{ matrix.package }}", dependencies = TRUE, type = .Platform$pkgType)
remotes::install_local(".", type = .Platform$pkgType, force = TRUE)
shell: Rscript {0}
- name: Session info
run: |
options(width = 100)
if (!requireNamespace("sessioninfo", quietly = TRUE)) install.packages("sessioninfo")
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}
# Begin custom: after install
# Must happen after installing system dependencies,
# https://github.com/ankane/setup-mariadb/issues/2
- uses: ankane/setup-mariadb@v1
if: matrix.package == 'RMariaDB'
with:
mariadb-version: 10.9
- name: Create database, set it to UTF-8
if: matrix.package == 'RMariaDB'
run: |
mysql -e "CREATE DATABASE IF NOT EXISTS test; ALTER DATABASE test CHARACTER SET 'utf8'; FLUSH PRIVILEGES;"
- uses: ankane/setup-postgres@v1
if: matrix.package == 'RPostgres'
with:
postgres-version: 13
- name: Create database
if: (runner.os != 'Windows') && (matrix.package == 'RPostgres')
run: |
createdb ${USER}
- name: Create database
if: (runner.os == 'Windows') && (matrix.package == 'RPostgres')
run: |
createdb ${USERNAME}
shell: bash
# End custom: after install
- name: Test backend
run: |
make -C revdep-dev test-${{ matrix.package }}
- name: Upload check results
if: failure()
uses: actions/upload-artifact@main
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: revdep-dev/${{ matrix.package }}
- name: Check rate limits
if: always()
run: |
curl -s --header "authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" https://api.github.com/rate_limit
shell: bash