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Migrate documentation to roxygen2 #61

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Oct 14, 2024
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2fb908f
beginning migrating to roxygen2
MichaelChirico Oct 7, 2024
5cb2fac
Merge branch 'master' into roxygen
MichaelChirico Oct 10, 2024
02d20ca
more progress on roxygenizing
MichaelChirico Oct 10, 2024
149994c
More roxygenizing
MichaelChirico Oct 10, 2024
f10bd12
slowly, steadily
MichaelChirico Oct 11, 2024
8c1da4f
Two more sections
MichaelChirico Oct 11, 2024
1368645
very close now
MichaelChirico Oct 11, 2024
d58ff7f
Finish the bit64-package conversion (?) first pass at least
MichaelChirico Oct 11, 2024
205fa9c
?cache translated
MichaelChirico Oct 11, 2024
5819a69
?hashcache
MichaelChirico Oct 11, 2024
f1225ab
Finish ?is.sorted.integer64
MichaelChirico Oct 11, 2024
1270834
hash64.R done
MichaelChirico Oct 11, 2024
413d63b
sporadic progress (torture)
MichaelChirico Oct 11, 2024
31ce769
?benchmark64, move data docs to own file
MichaelChirico Oct 12, 2024
da13fe1
?match.integer64
MichaelChirico Oct 12, 2024
993f85d
?unique.integer64
MichaelChirico Oct 12, 2024
4463fb4
?unipos
MichaelChirico Oct 12, 2024
c2b1995
?table.integer64
MichaelChirico Oct 12, 2024
4efe468
?keypos
MichaelChirico Oct 12, 2024
e6b93c2
?tiepos
MichaelChirico Oct 12, 2024
54c2d0a
?ptile
MichaelChirico Oct 12, 2024
e611e40
?qtile
MichaelChirico Oct 12, 2024
d19cacb
tidy '%' usage
MichaelChirico Oct 12, 2024
71f1bb2
?bit64S3
MichaelChirico Oct 12, 2024
fabb7f3
?sortnut
MichaelChirico Oct 12, 2024
71196dc
?ramsort.integer64
MichaelChirico Oct 12, 2024
b2b0195
?sort.integer64
MichaelChirico Oct 12, 2024
7398323
Ctrl+H-able parts
MichaelChirico Oct 12, 2024
a668c19
?identical.integer64, ?as.integer64.character
MichaelChirico Oct 12, 2024
7b726b1
NULL block separation
MichaelChirico Oct 12, 2024
7cd0fb7
?as.integer64.character and ?extract.replace.integer64
MichaelChirico Oct 12, 2024
e0ffb4a
?format.integer64
MichaelChirico Oct 12, 2024
2ff25ed
?sum.integer64
MichaelChirico Oct 12, 2024
1a850bc
?c.integer64
MichaelChirico Oct 12, 2024
58a4ed7
?rep.integer64, ?seq.integer64
MichaelChirico Oct 12, 2024
bd9e354
?as.data.frame.integer64
MichaelChirico Oct 12, 2024
0a8f927
?plusclass
MichaelChirico Oct 12, 2024
2ede4a8
?all.equal.integer64
MichaelChirico Oct 12, 2024
d1d3c9f
?xor.integer64
MichaelChirico Oct 12, 2024
048157c
tidying up
MichaelChirico Oct 12, 2024
977646d
trailing ws
MichaelChirico Oct 12, 2024
1cd729a
rename *.rd -> *.Rd to facilitate diffing
MichaelChirico Oct 12, 2024
43a66a7
Fix errors identified by roxygenize()
MichaelChirico Oct 12, 2024
d377e71
update roxygen2
MichaelChirico Oct 13, 2024
6535610
quiet roxygen2 warnings (possibly bad downstream implications)
MichaelChirico Oct 13, 2024
4548889
first pass at "prod" roxygenize() to check diffs
MichaelChirico Oct 13, 2024
76923ef
Merge branch 'master' into roxygen
MichaelChirico Oct 13, 2024
e75e249
markdown=TRUE
MichaelChirico Oct 13, 2024
f6142e3
Move as.{factor,ordered}.integer64 to integer64.R given roxygen2#1665…
MichaelChirico Oct 13, 2024
40e3987
Merge branch 'master' into roxygen
MichaelChirico Oct 13, 2024
eb8eb9f
Merge branch 'master' into roxygen
MichaelChirico Oct 13, 2024
162c1b0
Get as.data.frame method \usage to populate
MichaelChirico Oct 13, 2024
d6e8584
#, not ##, to generate \section{}
MichaelChirico Oct 13, 2024
2d5e661
href= style links don't need <...>
MichaelChirico Oct 13, 2024
3b0e8e6
[word] needs [`word`] to get \\code{} unlike [fun()]
MichaelChirico Oct 13, 2024
7e76f10
missing ** for \bold (->\strong)
MichaelChirico Oct 13, 2024
c647725
ensure S3 method registration doc for c.integer64
MichaelChirico Oct 13, 2024
eb1db9e
Special handling of link to `[` & similar
MichaelChirico Oct 13, 2024
1489f6b
Also needed for extraction methods within bit64
MichaelChirico Oct 13, 2024
aefef46
Missing '|' threw off table generation
MichaelChirico Oct 13, 2024
3e25f57
Ensure ?prank gets prank.integer64
MichaelChirico Oct 13, 2024
0725070
Move paragraph back to \description from \details
MichaelChirico Oct 13, 2024
7c97b33
Ensure ?format.integer64 gets format.integer64
MichaelChirico Oct 13, 2024
434c0cf
Merge branch 'master' into roxygen
MichaelChirico Oct 13, 2024
6c77883
Merge branch 'master' into roxygen
MichaelChirico Oct 13, 2024
fb6f047
Merge branch 'master' into roxygen
MichaelChirico Oct 13, 2024
1ae6623
Ensure ?all.equal.integer64 gets all.equal.integer64
MichaelChirico Oct 13, 2024
e792fec
Changes to resolve all/all.equal ambiguity
MichaelChirico Oct 13, 2024
364278c
silly typo
MichaelChirico Oct 13, 2024
57e3138
Ensure ?as.character.integer64 gets as.character.integer64
MichaelChirico Oct 13, 2024
5a94ddd
Ensure ?as.integer64.character gets as.integer64.character
MichaelChirico Oct 13, 2024
0cb4ad9
Fix bad linking of operators
MichaelChirico Oct 13, 2024
460fb9e
Merge branch 'master' into roxygen
MichaelChirico Oct 13, 2024
b258853
Typo 'n'->'an'
MichaelChirico Oct 13, 2024
d98d8f7
Ensure ?identical.integer64 gets identical.integer64
MichaelChirico Oct 13, 2024
ded5bfc
More cases ensuring @rdname correct
MichaelChirico Oct 13, 2024
162cf0b
don't bump 2nd para into \details
MichaelChirico Oct 14, 2024
4ece7ee
Missing @rdname for sortnut.integer64
MichaelChirico Oct 14, 2024
26b9311
Missing @rdname sum.integer64
MichaelChirico Oct 14, 2024
666dfad
Missing @rdname unipos.integer64
MichaelChirico Oct 14, 2024
27da175
Tag S3 methods to bit64S3
MichaelChirico Oct 14, 2024
be9db78
Custom @usage for base-owned generics
MichaelChirico Oct 14, 2024
61bd236
missing as.integer64.integer export, rd
MichaelChirico Oct 14, 2024
f624f25
Merge branch 'master' into roxygen
MichaelChirico Oct 14, 2024
cab2d07
Merge branch 'master' into roxygen
MichaelChirico Oct 14, 2024
c374ad8
Merge branch 'master' into roxygen
MichaelChirico Oct 14, 2024
c22cd44
Merge branch 'master' into roxygen
MichaelChirico Oct 14, 2024
7ddea8d
Merge branch 'master' into roxygen
MichaelChirico Oct 14, 2024
f1315a4
Merge branch 'master' into roxygen
MichaelChirico Oct 14, 2024
19ce58f
Missing importFrom() directives
MichaelChirico Oct 14, 2024
b2761d9
Add missing @useDynLib directive
MichaelChirico Oct 14, 2024
8d4a717
Missing S3 methods need explicit @exportS3Method
MichaelChirico Oct 14, 2024
ad24c7f
Complete roster of exports not yet matched vs master
MichaelChirico Oct 14, 2024
8d67153
{package} notation is not (yet?) translated "fancily"
MichaelChirico Oct 14, 2024
8b7ab6b
Fix some issues seen by R CMD check
MichaelChirico Oct 14, 2024
46f3a53
@rdname xor.integer64
MichaelChirico Oct 14, 2024
761b936
Sneaky requirement to escape % in manual @usage
MichaelChirico Oct 14, 2024
371a77c
Add NEWS given the heft of the change
MichaelChirico Oct 14, 2024
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2 changes: 2 additions & 0 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -28,3 +28,5 @@ Imports: graphics, methods, stats, utils
Suggests:
testthat (>= 3.0.0)
Config/testthat/edition: 3
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
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