remove setup.cfg files, other packaging cleanup

.pre-commit-config.yaml

@@ -108,8 +108,7 @@ repos:
                   [.](cmake|cpp|cu|cuh|h|hpp|sh|pxd|py|pyx|rs)$|
                   CMakeLists[.]txt$|
                   CMakeLists_standalone[.]txt$|
-                  meta[.]yaml$|
-                  setup[.]cfg$
+                  meta[.]yaml$
             exclude: |
               (?x)
                   docs/source/sphinxext/github_link\.py|

dependencies.yaml

@@ -7,39 +7,39 @@ files:
       arch: [x86_64, aarch64]
     includes:
       - build
-      - rapids_build
       - build_py_cuvs
+      - build_wheels
+      - checks
       - cuda
       - cuda_version
-      - depends_on_pylibraft
+      - depends_on_cupy
       - depends_on_librmm
+      - depends_on_pylibraft
       - develop
-      - checks
-      - build_wheels
-      - test_libcuvs
       - docs
+      - rapids_build
       - run_py_cuvs
+      - rust
+      - test_libcuvs
       - test_python_common
       - test_py_cuvs
-      - cupy
-      - rust
   bench_ann:
     output: conda
     matrix:
       cuda: ["11.8", "12.5"]
       arch: [x86_64, aarch64]
     includes:
-      - rapids_build
+      - bench
+      - bench_python
       - build_py_cuvs
       - cuda
       - cuda_version
+      - depends_on_cupy
       - depends_on_pylibraft
       - depends_on_librmm
       - develop
-      - bench
-      - bench_python
+      - rapids_build
       - rapids_build_setuptools
-      - cupy
   test_cpp:
     output: none
     includes:
@@ -49,10 +49,10 @@ files:
     output: none
     includes:
       - cuda_version
+      - depends_on_cupy
       - py_version
       - test_python_common
       - test_py_cuvs
-      - cupy
   checks:
     output: none
     includes:
@@ -61,19 +61,19 @@ files:
   docs:
     output: none
     includes:
+      - cuda
       - cuda_version
-      - cupy
+      - depends_on_cupy
       - docs
       - py_version
-      - rust
       - rapids_build
-      - cuda
+      - rust
   rust:
     output: none
     includes:
+      - cuda
       - cuda_version
       - rapids_build
-      - cuda
       - rust
   py_build_cuvs:
     output: pyproject
@@ -89,27 +89,27 @@ files:
       table: tool.rapids-build-backend
       key: requires
     includes:
-      - rapids_build
       - build_py_cuvs
+      - rapids_build
   py_run_cuvs:
     output: pyproject
     pyproject_dir: python/cuvs
     extras:
       table: project
     includes:
       - cuda_wheels
-      - run_py_cuvs
       - depends_on_pylibraft
+      - run_py_cuvs
   py_test_cuvs:
     output: pyproject
     pyproject_dir: python/cuvs
     extras:
       table: project.optional-dependencies
       key: test
     includes:
+      - depends_on_cupy
       - test_python_common
       - test_py_cuvs
-      - cupy
   py_build_cuvs_bench:
     output: pyproject
     pyproject_dir: python/cuvs_bench
@@ -368,7 +368,7 @@ dependencies:
               - nvidia-cusolver
               - nvidia-cusparse
 
-  cupy:
+  depends_on_cupy:
     common:
       - output_types: conda
         packages:

pyproject.toml

@@ -25,7 +25,7 @@ force-exclude = '''
 # unlike the match option above this match-dir will have no effect when
 # pydocstyle is invoked from pre-commit. Therefore this exclusion list must
 # also be maintained in the pre-commit config file.
-match-dir = "^(?!(ci|cpp|conda|docs)).*$"
+match-dir = "^(?!(ci|cpp|conda|docs|notebooks)).*$"
 select = "D201, D204, D206, D207, D208, D209, D210, D211, D214, D215, D300, D301, D302, D403, D405, D406, D407, D408, D409, D410, D411, D412, D414, D418"
     # Would like to enable the following rules in the future:
     # D200, D202, D205, D400
@@ -42,6 +42,6 @@ follow_imports = "skip"
 skip = "./.git,./.github,./cpp/build,.*egg-info.*,./.mypy_cache,.*_skbuild"
 # ignore short words, and typename parameters like OffsetT
 ignore-regex = "\\b(.{1,4}|[A-Z]\\w*T)\\b"
-ignore-words-list = "inout,numer"
+ignore-words-list = "inout,unparseable,numer"
 builtin = "clear"
 quiet-level = 3