Fixed bug with Leiden algorithm always running with default parameters. #10
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: GitHub Actions CI | |
| on: | |
| push: | |
| branches: [ main, master, develop ] | |
| paths-ignore: | |
| - '**.md' | |
| workflow_dispatch: | |
| jobs: | |
| ######################################################################################## | |
| make: | |
| name: Make | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| machine: [ubuntu-latest, macOS-12] | |
| compiler: [g++] | |
| runs-on: ['${{ matrix.machine }}'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: get tags | |
| run: | | |
| cd ./libs/igraph | |
| git fetch --tags origin | |
| - name: make | |
| run: | | |
| make -j32 CXX=${{matrix.compiler}} | |
| cp ./clusty ./clusty-${{matrix.compiler}} | |
| make clean | |
| - name: tar artifacts | |
| run: tar -cvf clusty.tar ./clusty-${{matrix.compiler}} ./test/cmp.py ./test/vir61.* | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: executable-artifact-${{ matrix.machine }} | |
| path: ./clusty.tar | |
| ######################################################################################## | |
| vir61-linkage: | |
| name: Vir61 | |
| needs: make | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| machine: [ubuntu-latest, macOS-12] | |
| compiler: [g++] | |
| algo: [single, complete] | |
| threshold: [95, 70] | |
| runs-on: ['${{ matrix.machine }}'] | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: executable-artifact-${{ matrix.machine }} | |
| path: ./ | |
| - name: untar artifacts | |
| run: | | |
| tar -xf clusty.tar | |
| - name: ${{matrix.algo}}, ${{matrix.threshold}} (with representatives, reordered columns) | |
| run: | | |
| ./clusty-${{matrix.compiler}} --algo ${{matrix.algo}} --objects-file ./test/vir61.list --similarity --min ani 0.${{matrix.threshold}} --id-cols id2 id1 --distance-col ani ./test/vir61.ani vir61.${{matrix.algo}}.${{matrix.threshold}} --out-representatives | |
| python ./test/cmp.py vir61.${{matrix.algo}}.${{matrix.threshold}} ./test/vir61.${{matrix.algo}}.${{matrix.threshold}}.python.csv | |