Empty sample fix

refresh-bio · Jun 28, 2024 · 1e6033f · 1e6033f
1 parent 79ab971
commit 1e6033f
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Showing 2 changed files with 7 additions and 1 deletion.
diff --git a/libs/zlib-ng b/libs/zlib-ng
diff --git a/src/prefix_kmer_db.cpp b/src/prefix_kmer_db.cpp
@@ -449,6 +449,12 @@ sample_id_t PrefixKmerDb::addKmers(
 	sample_id_t sampleId = AbstractKmerDb::addKmers(sampleName, kmers, kmersCount, kmerLength, fraction, atp);
 	uint32_t n_kmers = static_cast<uint32_t>(kmersCount);
 
+	if (n_kmers == 0)
+	{
+		LOG_NORMAL << "Empty sample: " << sampleName << endl;
+		return sampleId;
+	}
+
 //	std::fill(stats.workerReallocs.begin(), stats.workerReallocs.end(), 0);
 //	std::fill(stats.workerAdditions.begin(), stats.workerAdditions.end(), 0);
+5 −9		.gitattributes
+75 −34		.github/workflows/cmake.yml
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+32 −0		PORTING.md
+15 −14		README.md
+4 −4		adler32.c
+15 −0		arch/arm/arm_features.c
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+24 −25		cmake/detect-intrinsics.cmake
+40 −10		configure
+4 −0		cpu_features.h
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+147 −59		deflate.c
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+2 −1		test/CMakeLists.txt
+1 −0		test/benchmarks/CMakeLists.txt
+7 −1		test/benchmarks/benchmark_adler32.cc
+8 −2		test/benchmarks/benchmark_adler32_copy.cc
+6 −0		test/benchmarks/benchmark_compare256.cc
+67 −0		test/benchmarks/benchmark_compress.cc
+7 −1		test/benchmarks/benchmark_crc32.cc
+4 −0		test/benchmarks/benchmark_main.cc
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+31 −0		test/test_inflate_copy.cc
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+67 −0		zbuild.h
+2 −0		zlib-config.cmake.in
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+0 −48		zutil.c
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