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gff3 to gtf function updated
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reneshbedre committed May 24, 2020
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14 changes: 13 additions & 1 deletion README.md
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Expand Up @@ -525,14 +525,26 @@ Parameters | Description
`axtickfontsize` | Font size for axis ticks [float][default: 9]
`axtickfontname` | Font name for axis ticks [string][default: 'Arial']


Returns:

Regression plot image in same directory (reg_plot.png)

<a href="https://reneshbedre.github.io/blog/linearreg.html" target="_blank">Working Example</a>


<b>GFF3 to GTF file format conversion</b>

`bioinfokit.analys.gff.gff_to_gtf(file)`

Parameters | Description
------------ | -------------
`file` | GFF3 genome annotation file

Returns:

GTF format genome annotation file (file.gtf will be saved in same directory)

<a href="https://reneshbedre.github.io/blog/gffgtf.html" target="_blank">Working Example</a>


References:
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3 changes: 3 additions & 0 deletions VERSIONLOG.md
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v0.8 has the following updates and changes (May 24, 2020)
- GFF3 to GTF file conversion utility added and updated under class `gff`

v0.7.3 has the following updates and changes (May 14, 2020)
- In manhatten plot (`visuz.marker.mhat`), the labeling issue with `markernames` parameter corrected (see issue # 4 on github for details;
thanks to mkirchler for reporting)
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2 changes: 1 addition & 1 deletion bioinfokit/__init__.py
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name = "bioinfokit"
__version__ = "0.7.3"
__version__ = "0.8"
__author__ = "Renesh Bedre"


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