changing stub profile

replikation · Jun 17, 2021 · da1a279 · da1a279
1 parent c04a725
commit da1a279
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/.github/workflows/nextflow-test.yml → .github/workflows/DryRun.yml b/.github/workflows/nextflow-test.yml → .github/workflows/DryRun.yml
@@ -1,4 +1,4 @@
-name: Syntax_check
+name: DryRun
 
 on: [push]
 
@@ -12,8 +12,8 @@ jobs:
     - name: fasta dry run
       run: |
           touch genome.fasta 
-          ./nextflow run poreCov.nf --fasta genome.fasta -stub -profile local,stub
+          ./nextflow run poreCov.nf --fasta genome.fasta -stub -profile stub --cores 2 --max_cores 2
     - name: fastq dry run
       run: |
           touch reads.fastq 
-          ./nextflow run poreCov.nf --fastq reads.fastq -stub -profile local,stub
+          ./nextflow run poreCov.nf --fastq reads.fastq -stub -profile stub --cores 2 --max_cores 2
diff --git a/poreCov.nf b/poreCov.nf
@@ -80,6 +80,7 @@ if ( params.help ) { exit 0, helpMSG() }
         workflow.profile.contains('nanozoo') ||
         workflow.profile.contains('ukj_cloud') ||
         workflow.profile.contains('local') ||
+        workflow.profile.contains('stub') ||
         workflow.profile.contains('slurm')
         ) { "executer selected" }
     else { exit 1, "No executer selected:  -profile EXECUTER,ENGINE" }