bump default container version for pangolin and nextclade

[MarieLataretu]

bump to latest containers:

• nanozoo/pangolin-v4:4.3--1.25.1
• nanozoo/nextclade3:3.2.1--2024-02-16

[replikation]

Could you also adjust this part and test on --update?

poreCov/poreCov.nf

Line 260 in 0ff536f

params.nextcladedocker = "nanozoo/nextclade2:" + tagname

[replikation]

@DataSpott can you validate the PR?

[MarieLataretu]

worked also w/ --update for me 👍

[replikation]

thank you @MarieLataretu

[DataSpott]

Tested 44 samples as I would rerun a routine batch. Once using the [--update]-flag and once omitting it, both runs were completed successfully. Also, with the [--update]-flag, the first attempt to create the final report-HTML failed, but completed on the 2nd try using [-resume].

Used command:
nextflow run replikation/poreCov -r 5461df6 -profile ukj_cloud --primerV /path/to/nCoV-2019_V1200_dec-2022.bed --fastq "//path/to/poreCov_test_files/*.fastq.gz" --minLength 100 --maxLength 1500 --medaka_model "r941_min_sup_g507" --output /path/to/poreCov_test_without-update --rapid [--update]