Compile proto files with newer toolchain, replaces deprecated protobuf lib #510
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Reason for the change
There is actually no make target to compile the proto files, also an ancient version of protoc was used back then which uses a now deprecated protobuf library.
Add a make target to compile and format the proto files and use recent tooling to do so which also uses newer protobuf library from google.
Maybe this should be merged once we have a working integration test.