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Worfkflow development tools

rioualen edited this page Apr 7, 2016 · 1 revision

Workflow/pipeline development

Galaxy

Link

Pros: doesn't require bioinformatics knowledge. Cons: redundancy of the tools, lack of quality assessment for tool wrappers.

Nebula

Link

Galaxy instance developed by the Institut Curie and dedicated to ChIP-seq analysis.

Eoulsan

Link

Mobyle

Link

The Mobyle platform was developed by the informatics center of the Institut Pasteur and the [Ressource Parisienne en Bioinformatique Structurale] platform(http://bioserv.rpbs.univ-paris-diderot.fr/index.html).

More on the wiki.

Publication

Snakemake

Link

TODO Snakemake advantages.

Contacts:

  • Jacques van Helden
  • Claire Rioualen
  • Lucie Khamvongsa

A few more links:

Taverna

Link

PIPE/BPIPE/CBPIPE

others