Update eval.nf

add file checks
rki-mf1 · May 6, 2024 · caebc78 · caebc78
1 parent 91f6bd5
commit caebc78
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/eval.nf b/eval.nf
@@ -13,13 +13,13 @@ workflow{
 
     if (params.callsets_dir != "" && params.sample_sheet == "") {
 
-        ch_callsets = Channel.fromPath(params.callsets_dir + "/" + "*.{vcf,vcf.gz}")
+        ch_callsets = Channel.fromPath(params.callsets_dir + "/" + "*.{vcf,vcf.gz}", checkIfExists: true)
         ch_callsets
             .map { it -> tuple(it.toString().split('/')[-1].tokenize('_')[1].replaceFirst('.vcf', '').replaceFirst('.gz', '').toInteger(), file(it)) }
             .set {ch_callsets}
         // ch_callsets.view()
 
-        ch_truthsets = Channel.fromPath(params.outdir + "/" + "simulated_hap*.vcf")
+        ch_truthsets = Channel.fromPath(params.outdir + "/" + "simulated_hap*.vcf", checkIfExists: true)
         ch_truthsets
             .map { it -> tuple(it.toString().split('/')[-1].tokenize('_')[1].replaceFirst('hap', '').replaceFirst('.vcf', '').toInteger(), file(it)) }
             .set {ch_truthsets}