renamed neonetb to neonetatl

ropensci · Jan 2, 2024 · 59e7d6f · 59e7d6f
1 parent c088682
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: c14bazAAR
 Title: Download and Prepare C14 Dates from Different Source Databases
-Description: Query different C14 date databases and apply basic data cleaning, merging and calibration steps. Currently available databases: 14cpalaeolithic, 14sea, adrac, agrichange, aida, austarch, bda, calpal, caribbean, eubar, euroevol, irdd, jomon, katsianis, kiteeastafrica, medafricarbon, mesorad, neonet, nerd, p3k14c, pacea, palmisano, radon, radonb, rxpand, sard.
+Description: Query different C14 date databases and apply basic data cleaning, merging and calibration steps. Currently available databases: 14cpalaeolithic, 14sea, adrac, agrichange, aida, austarch, bda, calpal, caribbean, eubar, euroevol, irdd, jomon, katsianis, kiteeastafrica, medafricarbon, mesorad, neonet, neonetatl, nerd, p3k14c, pacea, palmisano, radon, radonb, rxpand, sard.
 Version: 4.0.0
 Authors@R: 
     c(person(given = "Clemens",

diff --git a/NAMESPACE b/NAMESPACE
@@ -53,7 +53,7 @@ export(get_kiteeastafrica)
 export(get_medafricarbon)
 export(get_mesorad)
 export(get_neonet)
-export(get_neonetb)
+export(get_neonetatl)
 export(get_nerd)
 export(get_p3k14c)
 export(get_pacea)

diff --git a/R/get_c14data.R b/R/get_c14data.R
@@ -154,7 +154,7 @@ get_all_parser_functions <- function() {
     "sard" = c14bazAAR::get_sard,
     "p3k14c" = c14bazAAR::get_p3k14c,
     "neonet" = c14bazAAR::get_neonet,
-    "neonet" = c14bazAAR::get_neonetb
+    "neonet" = c14bazAAR::get_neonetatl
   ))
 }
 

diff --git a/R/get_neonetb.R b/R/get_neonetb.R
@@ -1,6 +1,6 @@
 #' @rdname db_getter_backend
 #' @export
-get_neonetb <- function(db_url = get_db_url("neonetb")) {
+get_neonetatl <- function(db_url = get_db_url("neonetatl")) {
 
   check_connection_to_url(db_url)
 
@@ -11,7 +11,7 @@ get_neonetb <- function(db_url = get_db_url("neonetb")) {
     showProgress = FALSE
   )
 
-  neonetb <- c14dates %>%
+  neonetatl <- c14dates %>%
     dplyr::transmute(
       labnr = .data[["LabCode"]],
       c14age = .data[["C14Age"]],
@@ -26,10 +26,10 @@ get_neonetb <- function(db_url = get_db_url("neonetb")) {
       lon = .data[["Longitude"]],
       shortref = .data[["bib"]],
     ) %>% dplyr::mutate(
-      sourcedb = "neonetb",
-      sourcedb_version = get_db_version("neonetb")
+      sourcedb = "neonetatl",
+      sourcedb_version = get_db_version("neonetatl")
     ) %>%
     as.c14_date_list()
 
-  return(neonetb)
+  return(neonetatl)
 }
diff --git a/README.md b/README.md
@@ -170,7 +170,7 @@ To suggest other archives to be queried you can join the discussion [here](https
 | [**MedAfriCarbon**](https://zenodo.org/record/3689716#.XnSHp4hKiUk) <br> 2020-03-20 <br> [`get_c14data("medafricarbon")`](R/get_medafricarbon.R) | The MedAfriCarbon Radiocarbon Database and [Web Application](https://theia.arch.cam.ac.uk/MedAfriCarbon/). Archaeological Dynamics in Mediterranean Africa, ca. 9600–700 BC by [Giulio Lucarini, Toby Wilkinson, Enrico R. Crema, Augusto Palombini, Andrew Bevan and Cyprian Broodbank](https://openarchaeologydata.metajnl.com/articles/10.5334/joad.60/) (2020). |
 | [**MesoRAD**](https://github.com/eehh-stanford/price2020) <br> 2020-09-01 (V1.1) <br> [`get_c14data("mesorad")`](R/get_mesorad.R) | Data for End-to-end Bayesian analysis of 14C dates reveals new insights into lowland Maya demography by [Michael Holton Price, José M. Capriles, Julie A. Hoggarth, Kyle Bocinsky, Claire E. Ebert, James Holland Jones](https://doi.org/10.1101/2020.07.02.185256). |
 | [**neonet**](https://github.com/zoometh/neonet) <br> 2023-12-08 (V2)  <br>  [`get_c14data("neonet")`](R/neonet.R) | NeoNet Med. Radiocarbon Dates for the Late Mesolithic/Early Neolithic Transition in the North Central-Western Mediterranean Basin by [Thomas Huet, Miriam Cubas, Juan F. Gibaja, F. Xavier Oms, Niccolò Mazzucco](https://openarchaeologydata.metajnl.com/articles/10.5334/joad.87). |
-| [**neonetb**](https://github.com/zoometh/neonet) <br> 2023-12-08 (V1)  <br> [`get_c14data("neonetb")`](R/neonetb.R) | NeoNet Atlantic. Radiocarbon Dates for the Late Mesolithic/Early Neolithic Transition in the Southern European Atlantic Coast by [Thomas Huet, Ana Catarina Basílio, António Faustino Carvalho, Miriam Cubas, Juan F. Gibaja, Elías López-Romero, F. Xavier Oms, Niccolò Mazzucco](https://doi.org/10.13131/unipi/z332-ye56). |
+| [**neonetatl**](https://github.com/zoometh/neonet) <br> 2023-12-08 (V1)  <br> [`get_c14data("neonetatl")`](R/neonetatl.R) | NeoNet Atlantic. Radiocarbon Dates for the Late Mesolithic/Early Neolithic Transition in the Southern European Atlantic Coast by [Thomas Huet, Ana Catarina Basílio, António Faustino Carvalho, Miriam Cubas, Juan F. Gibaja, Elías López-Romero, F. Xavier Oms, Niccolò Mazzucco](https://doi.org/10.13131/unipi/z332-ye56). |
 | [**NERD**](https://github.com/apalmisano82/NERD) <br> latest <br> [`get_c14data("nerd")`](R/get_nerd.R) | Near East Radiocarbon Dates Alessio Palmisano, Andrew Bevan, Dan Lawrence & Stephen Shennan (2021). |
 | [**pacea**](http://www.paleoanthro.org/media/journal/content/PA20110001_S01.zip) <br> 2020-01-22 <br> [`get_c14data("pacea")`](R/get_pacea.R) | PACEA Geo-Referenced Radiocarbon Database for the late Middle Paleolithic, Upper Paleolithic, and initial Holocene in Europe by [Francesco D'Errico, William E. Banks, Marian Vanhaeren, Véronique Laroulandie and Mathieu Langlais](http://www.paleoanthro.org/media/journal/content/PA20110001.pdf) (2011).. |
 | [**palmisano**](https://dx.doi.org/10.14324/000.ds.1575442) <br> 2017-09-23 <br> [`get_c14data("palmisano")`](R/get_palmisano.R) | Regional Demographic Trends and Settlement Patterns in Central Italy: Archaeological Sites and Radiocarbon Dates by [Alessio Palmisano, Andrew Bevan and Stephen Shennan](https://openarchaeologydata.metajnl.com/articles/10.5334/joad.43/) (2018). |

diff --git a/data-raw/db_info_table.csv b/data-raw/db_info_table.csv
@@ -28,4 +28,4 @@ aida,today,1,https://raw.githubusercontent.com/apalmisano82/AIDA/main/dates.csv
 sard,2021-03-01,1,https://raw.githubusercontent.com/emmaloftus/Southern-African-Radiocarbon-Database/main/SARD_Mar2021_14C.csv
 p3k14c,2021-08-03,1,https://raw.githubusercontent.com/people3k/p3k14c/1.0.0/inst/p3k14c_scrubbed_fuzzed.csv
 neonet,2023-12-08,1,https://digitallib.unipi.it/fedora/objects/mag:2814/datastreams/MMb714bbfacf4af2ce1fd7025e3789a99b/content
-neonetb,2023-12-08,1,https://digitallib.unipi.it/fedora/objects/mag:2627/datastreams/MM54ff3698c0ea78b77469ce6462c2ca36/content
+neonetatl,2023-12-08,1,https://digitallib.unipi.it/fedora/objects/mag:2627/datastreams/MM54ff3698c0ea78b77469ce6462c2ca36/content
diff --git a/data-raw/variable_reference.csv b/data-raw/variable_reference.csv
@@ -602,21 +602,21 @@ shortref,neonet,bib
 site,neonet,Site Name
 sitetype,neonet,
 species,neonet,Material Species
-c13val,neonetb,
-c14age,neonetb,C14Age
-c14std,neonetb,C14SD
-comment,neonetb,
-country,neonetb,Country
-culture,neonetb,
-feature,neonetb,Phase Code
-labnr,neonetb,Lab Code
-lat,neonetb,Latitude
-lon,neonetb,Longitude
-material,neonetb,Material
-method,neonetb,
-period,neonetb,Period
-region,neonetb,
-shortref,neonetb,bib
-site,neonetb,Site Name
-sitetype,neonetb,
-species,neonetb,Material Species
+c13val,neonetatl,
+c14age,neonetatl,C14Age
+c14std,neonetatl,C14SD
+comment,neonetatl,
+country,neonetatl,Country
+culture,neonetatl,
+feature,neonetatl,Phase Code
+labnr,neonetatl,Lab Code
+lat,neonetatl,Latitude
+lon,neonetatl,Longitude
+material,neonetatl,Material
+method,neonetatl,
+period,neonetatl,Period
+region,neonetatl,
+shortref,neonetatl,bib
+site,neonetatl,Site Name
+sitetype,neonetatl,
+species,neonetatl,Material Species
diff --git a/man/c14bazAAR-package.Rd b/man/c14bazAAR-package.Rd
diff --git a/man/db_getter_backend.Rd b/man/db_getter_backend.Rd