dependencies ‘adephylo’, ‘Biobase’, ‘GO.db’, ‘GSEABase’, ‘org.Hs.eg.db’, ‘reactome.db’, ‘biomaRt’, ‘Biostrings’, ‘sangerseqR’, ‘glmmADMB’, ‘AnnotationDbi’, ‘clusterProfiler’, ‘Rdonlp2’, ‘hoa’, ‘nCDunnett’, ‘reliaR’, ‘STAR’, ‘BiocGenerics’, ‘IRanges’, ‘GenomicRanges’, ‘GenomicFeatures’, ‘VariantAnnotation’, ‘rtracklayer’, ‘S4Vectors’, ‘GenomeInfoDb’, ‘BiocStyle’, ‘graph’, ‘Rgraphviz’, ‘snpStats’, ‘EBImage’, ‘marssTMB’, ‘gurobi’, ‘corpus.useR.2008.abstracts’, ‘RandomFields’, ‘RandomFieldsUtils’, ‘BiocParallel’, ‘org.Dr.eg.db’, ‘org.Mm.eg.db’, ‘pcaMethods’, ‘scde’, ‘M3C’, ‘RBGL’, ‘rplos’, ‘DECIPHER’, ‘msa’, ‘odseq’, ‘ggsubplot’, ‘stubthat’, ‘textreadr’, ‘spDataLarge’, ‘Icens’, ‘affy’, ‘beadarray’, ‘affydata’, ‘hgu95av2cdf’, ‘beadarrayExampleData’, ‘illuminaHumanv3.db [... truncated]