dontrun

ropensci · Feb 10, 2024 · 27538ea · 27538ea
1 parent 63c5c62
commit 27538ea
Show file tree

Hide file tree

Showing 13 changed files with 13 additions and 13 deletions.
diff --git a/NEWS b/NEWS
@@ -15,7 +15,7 @@ dendroNetwork 0.5.1 (2024-02-10)
   * added .github/CONTRIBUTING.md using usethis::use_tidy_contributing()
   * DESCRIPTION: added URL and BugReports to DESCRIPTION + package checks
   * correction in clique_community_names(_par) functions, due to [k] seen as link
-  * added \donttest{} to cytoscape functions
+  * added \dontrun{} to cytoscape functions
 ### CONTINUOUS INTEGRATION
   * added GitHub Action for BiocMananager (https://lcolladotor.github.io/biocthis/index.html)
   * added more tests

diff --git a/R/clique_community_names_par.R b/R/clique_community_names_par.R
@@ -10,7 +10,7 @@
 #' @returns a dataframe with node names and community name. The community is named as CPM_Kk_number_of_community with k replaced by the value of k.
 #'
 #' @examples
-#' \donttest{
+#' \dontrun{
 #' hol_sim <- sim_table(hol_rom)
 #' g_hol <- dendro_network(hol_sim, r_threshold = 0.4, sgc_threshold = 0.4)
 #' clique_community_names_par(g_hol, k = 3, n_core = 2)

diff --git a/R/cyto_clean_styles.R b/R/cyto_clean_styles.R
@@ -2,7 +2,7 @@
 #'
 #' @returns Cytoscape cleaned of styles and only styles with white and grey nodes.
 #' @examples
-#' \donttest{
+#' \dontrun{
 #' cyto_clean_styles()
 #' }
 #'

diff --git a/R/cyto_create_cpm_style.R b/R/cyto_create_cpm_style.R
@@ -11,7 +11,7 @@
 #' @param style_name name of the output style in Cytoscape. If set to "auto", the style is derived from the name of the network and value for k
 #' @returns The style applied in Cytoscape, no objects in R as return.
 #' @examples
-#' \donttest{
+#' \dontrun{
 #' data(hol_rom)
 #' sim_table_hol <- sim_table(hol_rom)
 #' g_hol <- dendro_network(sim_table_hol)

diff --git a/R/cyto_create_gn_style.R b/R/cyto_create_gn_style.R
@@ -9,7 +9,7 @@
 #' @param style_name name of the output style in Cytoscape. If set to "auto", the style is derived from the name of the network and value for k
 #' @returns The style applied in Cytoscape, no objects in R as return.
 #' @examples
-#' \donttest{
+#' \dontrun{
 #' data(hol_rom)
 #' sim_table_hol <- sim_table(hol_rom)
 #' g_hol <- dendro_network(sim_table_hol)

diff --git a/R/cyto_create_graph.R b/R/cyto_create_graph.R
@@ -12,7 +12,7 @@
 #'
 #' @returns a graph in Cytoscape
 #' @examples
-#' \donttest{
+#' \dontrun{
 #' data(hol_rom)
 #' sim_table_hol <- sim_table(hol_rom)
 #' g_hol <- dendro_network(sim_table_hol)

diff --git a/R/wuchswerte.R b/R/wuchswerte.R
@@ -7,7 +7,7 @@
 #' @param x tree-ring series
 #' @returns tree-ring series normalized according to Hollstein (1980, 14-15)
 #' @examples
-#' \donttest{
+#' \dontrun{
 #' data(hol_rom)
 #' wuchswerte(hol_rom)
 #' # to convert a rwl object into wuchwerte use:

diff --git a/man/clique_community_names_par.Rd b/man/clique_community_names_par.Rd
diff --git a/man/cyto_clean_styles.Rd b/man/cyto_clean_styles.Rd
diff --git a/man/cyto_create_cpm_style.Rd b/man/cyto_create_cpm_style.Rd
diff --git a/man/cyto_create_gn_style.Rd b/man/cyto_create_gn_style.Rd
diff --git a/man/cyto_create_graph.Rd b/man/cyto_create_graph.Rd
diff --git a/man/wuchswerte.Rd b/man/wuchswerte.Rd