EDAM stand-alone browser using D3.js

The EDAM Browser is a client-side web-based visualization javascript widget. Its goals are to help annotating bioscientific resources and services with EDAM, and to facilitate and foster community contributions to EDAM.

Use it ...

... online

Go to https://edamontology.github.io/edam-browser/

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... locally

1. Download/clone the repository

2. Change to working directory : cd edam-browser

Option 1: You need node.js and npm

• npm install
• npm run dev

Option 2: You need Python3

Run python3 -m http.server 20080 . It starts a web server allowing you to browse EDAM on localhost:20080.

Option 3:

• Open Visual Studio Code extensions explorer, and search for Live Server
• Install the "Liver Server" extension
• With the index.html file open in the editor, right-click and select "Open with Live Server" to launch EDAM browser on http://127.0.0.1:5500 in your default web browser

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... with a custom ontology

EDAM Browser can render ontology described in JSON following the schema; see here for more information on how to load a custom ontology.

Third-party integration

Demo

A demo showing you how to add the tree visualization and how you can interact with the it programmatically is available at https://edamontology.github.io/edam-browser/demo.html

Dependencies

The EDAM Browser relies on D3.js 4.13.0, JQuery 3.2.1, JQuery UI 1.12.1, Boostrap 3.3.7, and Font Awesome 5.6.0