limit maximum number of sequential plots to 256

salilab · Mar 20, 2024 · 847e41b · 847e41b
1 parent ba527bd
commit 847e41b
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Showing 4 changed files with 10 additions and 6 deletions.
diff --git a/ihm_validation/get_plots.py b/ihm_validation/get_plots.py
@@ -26,6 +26,7 @@
 silence(MISSING_RENDERERS, True)
 silence(EMPTY_LAYOUT, True)
 
+MAXPLOTS = 256
 
 class Plots(GetInputInformation):
     def __init__(self, mmcif, imageDirName, driver):
@@ -118,14 +119,16 @@ def plot_quality_at_glance(self, molprobity_data: dict, exv_data: dict,
 
         # if there isn't molprobity data, we plot exc vol data
         elif exv_data:
-            model = exv_data['Models']
-            satisfaction = exv_data['Number of violations']
+            numplots = min(len(exv_data['Models']), MAXPLOTS)
+
+            model = exv_data['Models'][:numplots]
+            satisfaction = exv_data['Number of violations'][:numplots]
             # make sure data is plot-able
             try:
                 counts = [float(i) for i in satisfaction]
             except (ValueError):
                 return
-            violations = exv_data['Excluded Volume Satisfaction (%)']
+            violations = exv_data['Excluded Volume Satisfaction (%)'][:numplots]
             Scores = ['Model ' + str(i+1) for i, j in enumerate(model)]
             legends = ['Model ' + str(i+1) + ': ' + str(int(j)) +
                        '('+str(violations[i])+' %)' for i, j in enumerate(counts)]

diff --git a/ihm_validation/report.py b/ihm_validation/report.py
@@ -99,6 +99,7 @@ def run_entry_composition(self, Template_Dict: dict) -> dict:
         Template_Dict['ChainL'] = self.input.get_composition()['Chain ID [auth]']
         Template_Dict['ChainLMap'] = self.input.get_auth_label_map()
         Template_Dict['number_of_fits'] = 0
+        Template_Dict['MAXPLOTS'] = get_plots.MAXPLOTS
         return Template_Dict
 
     def check_mmcif(self, Template_Dict: dict) -> None:

diff --git a/templates/full_validation_pdf.html b/templates/full_validation_pdf.html
@@ -217,7 +217,7 @@ <h3 align="center">
               <a name='qual'><u>Overall quality</u></a> <a class='help1' style="background-color:#228B22;color:#000000;text-decoration:none font-size=16px" href="https://pdb-dev.wwpdb.org/validation_help.html#overview">?</a>
             </h3>
             <p align="justify">
-              <em>This validation report contains model quality assessments for all structures, data quality assessment for SAS datasets and fit to model assessments for SAS datasets. Data quality and fit to model assessments for other datasets and model uncertainty are under development.</em>
+            <em>This validation report contains model quality assessments for all structures, data quality assessment for SAS datasets and fit to model assessments for SAS datasets. Data quality and fit to model assessments for other datasets and model uncertainty are under development. Number of plots is limited to {{MAXPLOTS}}.</em>
             </p>
 
             <!-- Molprobity or excluded volume -->
@@ -233,7 +233,7 @@ <h5 align=center>
                   </h5>
                 {% endif %}
 
-                {% for i in range(NumModels) %}
+                {% for i in range([NumModels, MAXPLOTS] | min) %}
                   <div>
                     <img src={{ "../images/" ~ ID_w[0] ~ '_' ~ i ~ '_quality_at_glance_MQ.svg'}}>
                   </div>

diff --git a/templates/main.html b/templates/main.html
@@ -81,7 +81,7 @@ <h3 align="center">
           <a class='help' title='help' style="background-color:#228B22;color:#000000;text-decoration:none font-size=16px" href="/validation_help.html#overview">?</a>
         </h3>
         <p align="justify">
-          <em>This validation report contains model quality assessments for all structures. For more detail for each assessment, use the dropdown menus at the top of this page.
+          <em>This validation report contains model quality assessments for all structures. For more detail for each assessment, use the dropdown menus at the top of this page. Number of plots is limited to {{MAXPLOTS}}.
           </em>
         </p>
         {% if 'SAS DATA' in Data and sasdb_sascif|length > 0 %}