Deployment script for ubuntu 20.04/22.04 based instances

docker/deploy.sh

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+#!/bin/bash
+
+apt update -y
+apt install -y wget git
+
+# Download prebuilt singularity package for Ubuntu 20.04
+wget https://salilab.org/~arthur/ihmv/packages/singularity_3.8.4-2_amd64.deb
+# backup link
+# wget https://vsb.fbb.msu.ru/share/aozalevsky/pdb_dev/ihmv/packages/singularity_3.8.4-2_amd64.deb
+
+# Install singularity
+apt install -yf ./singularity_3.8.4-2_amd64.deb
+
+# Remove deb
+rm ./singularity_3.8.4-2_amd64.deb
+
+# Download precompiled singularity image
+wget https://salilab.org/~arthur/ihmv/prebuilt_containers/ihmv_20231222.sif
+# backup link
+# wget https://vsb.fbb.msu.ru/share/aozalevsky/pdb_dev/ihmv/prebuilt_images/ihmv_20231222.sif
+
+# Clone code
+git clone --branch dev_2.0 https://github.com/salilab/IHMValidation.git
+
+# Create dirs
+mkdir -p input output cache
+
+# Test installation
+singularity exec --pid --bind IHMValidation/:/opt/IHMValidation,input:/ihmv/input,output:/ihmv/output,cache:/ihmv/cache ihmv_20231222.sif /opt/IHMValidation/ihm_validation/ihm_validator.py --output-root /ihmv/output --cache /ihmv/cache --force -h