Use UniProt accession if available #703
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| name: CI | |
| on: [push, pull_request] | |
| env: | |
| CXXFLAGS: "-fprofile-arcs -ftest-coverage" | |
| jobs: | |
| test: | |
| name: "Python ${{ matrix.python-version }} / ${{ matrix.os }}" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| os: [ubuntu-22.04] | |
| compiler: [gcc] | |
| env: | |
| CC: ${{ matrix.compiler }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update -qq | |
| sudo apt-get install -qq libboost-all-dev swig libhdf5-dev libeigen3-dev \ | |
| cmake libcgal-dev libcgal-qt5-dev libcereal-dev \ | |
| libfftw3-dev libopencv-dev libgsl-dev libann-dev \ | |
| libprotobuf-dev protobuf-compiler \ | |
| libopenmpi-dev python3-dev python3-numpy python3-protobuf \ | |
| python3-nose python3-pip python3-biopython | |
| pip3 install codecov | |
| - name: Set up git | |
| run: ./setup_git.py | |
| - name: Build IMP | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake .. -DUSE_PYTHON2=OFF -DCMAKE_CXX_FLAGS="${{ env.CXXFLAGS }}" -DCGAL_DIR=/usr/lib/x86_64-linux-gnu/cmake/CGAL/ | |
| make -k -j 2 |