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These allow a structure to be tagged with a tree of provenance nodes, that explain how the structure was created. Relates salilab/imp#976.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,161 @@ | ||
| /** | ||
| * \file RMF/decorator/provenance.h | ||
| * \brief Add a pointer from a node to another provenance node. | ||
| * | ||
| * Copyright 2007-2017 IMP Inventors. All rights reserved. | ||
| * | ||
| */ | ||
|
|
||
| #ifndef RMF_DECORATOR_PROVENANCE_H | ||
| #define RMF_DECORATOR_PROVENANCE_H | ||
|
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| #include <RMF/config.h> | ||
| #include <RMF/infrastructure_macros.h> | ||
| #include <RMF/NodeHandle.h> | ||
| #include <RMF/FileHandle.h> | ||
| #include <RMF/Decorator.h> | ||
| #include <RMF/constants.h> | ||
| #include <RMF/Vector.h> | ||
| #include <RMF/decorator/provenance_types.h> | ||
| #include <boost/array.hpp> | ||
| #include <boost/lexical_cast.hpp> | ||
|
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||
| RMF_ENABLE_WARNINGS | ||
| namespace RMF { | ||
| namespace decorator { | ||
|
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| /** See also Provenance and ProvenanceFactory. | ||
| */ | ||
| class ProvenanceConst : public Decorator { | ||
| friend class ProvenanceFactory; | ||
| friend class Provenance; | ||
| IntKey provenance_; | ||
| ProvenanceConst(NodeConstHandle nh, IntKey provenance) | ||
| : Decorator(nh), provenance_(provenance) {} | ||
|
|
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| public: | ||
| NodeConstHandle get_provenance() const { | ||
| try { | ||
| return get_node().get_file().get_node( | ||
| NodeID(get_node().get_value(provenance_))); | ||
| } | ||
| RMF_DECORATOR_CATCH(); | ||
| } | ||
| NodeConstHandle get_frame_provenance() const { | ||
| try { | ||
| return get_node().get_file().get_node( | ||
| NodeID(get_node().get_frame_value(provenance_))); | ||
| } | ||
| RMF_DECORATOR_CATCH(); | ||
| } | ||
| NodeConstHandle get_static_provenance() const { | ||
| try { | ||
| return get_node().get_file().get_node( | ||
| NodeID(get_node().get_static_value(provenance_))); | ||
| } | ||
| RMF_DECORATOR_CATCH(); | ||
| } | ||
|
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| static std::string get_decorator_type_name() { return "ProvenanceConst"; } | ||
| RMF_SHOWABLE(ProvenanceConst, "Provenance: " << get_node()); | ||
| }; | ||
| /** See also ProvenanceFactory. | ||
| */ | ||
| class Provenance : public ProvenanceConst { | ||
| friend class ProvenanceFactory; | ||
| Provenance(NodeHandle nh, IntKey provenance) | ||
| : ProvenanceConst(nh, provenance) {} | ||
|
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| public: | ||
|
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| NodeHandle get_provenance() const { | ||
| try { | ||
| return get_node().get_file().get_node( | ||
| NodeID(get_node().get_value(provenance_))); | ||
| } | ||
| RMF_DECORATOR_CATCH(); | ||
| } | ||
| NodeHandle get_frame_provenance() const { | ||
| try { | ||
| return get_node().get_file().get_node( | ||
| NodeID(get_node().get_frame_value(provenance_))); | ||
| } | ||
| RMF_DECORATOR_CATCH(); | ||
| } | ||
| NodeHandle get_static_provenance() const { | ||
| try { | ||
| return get_node().get_file().get_node( | ||
| NodeID(get_node().get_static_value(provenance_))); | ||
| } | ||
| RMF_DECORATOR_CATCH(); | ||
| } | ||
|
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||
| void set_provenance(NodeConstHandle v) { | ||
| try { | ||
| get_node().set_value(provenance_, v.get_id().get_index()); | ||
| } | ||
| RMF_DECORATOR_CATCH(); | ||
| } | ||
| void set_frame_provenance(NodeConstHandle v) { | ||
| try { | ||
| get_node().set_frame_value(provenance_, v.get_id().get_index()); | ||
| } | ||
| RMF_DECORATOR_CATCH(); | ||
| } | ||
| void set_static_provenance(NodeConstHandle v) { | ||
| try { | ||
| get_node().set_static_value(provenance_, v.get_id().get_index()); | ||
| } | ||
| RMF_DECORATOR_CATCH(); | ||
| } | ||
|
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| static std::string get_decorator_type_name() { return "Provenance"; } | ||
| }; | ||
|
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| /** Create decorators of type Provenance. | ||
| */ | ||
| class ProvenanceFactory : public Factory { | ||
| Category cat_; | ||
| IntKey provenance_; | ||
|
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| public: | ||
| ProvenanceFactory(FileConstHandle fh) | ||
| : cat_(fh.get_category("sequence")), | ||
| provenance_(fh.get_key<IntTag>(cat_, "provenance")) {} | ||
| ProvenanceFactory(FileHandle fh) | ||
| : cat_(fh.get_category("sequence")), | ||
| provenance_(fh.get_key<IntTag>(cat_, "provenance")) {} | ||
| /** Get a ProvenanceConst for nh.*/ | ||
| ProvenanceConst get(NodeConstHandle nh) const { | ||
| RMF_USAGE_CHECK((nh.get_type() == RMF::REPRESENTATION), | ||
| std::string("Bad node type. Got \"") + | ||
| boost::lexical_cast<std::string>(nh.get_type()) + | ||
| "\" in decorator type Provenance"); | ||
| return ProvenanceConst(nh, provenance_); | ||
| } | ||
| /** Get a Provenance for nh.*/ | ||
| Provenance get(NodeHandle nh) const { | ||
| RMF_USAGE_CHECK((nh.get_type() == RMF::REPRESENTATION), | ||
| std::string("Bad node type. Got \"") + | ||
| boost::lexical_cast<std::string>(nh.get_type()) + | ||
| "\" in decorator type Provenance"); | ||
| return Provenance(nh, provenance_); | ||
| } | ||
| /** Check whether nh has all the attributes required to be a | ||
| ProvenanceConst.*/ | ||
| bool get_is(NodeConstHandle nh) const { | ||
| return (nh.get_type() == RMF::REPRESENTATION) && | ||
| !nh.get_value(provenance_).get_is_null(); | ||
| } | ||
| bool get_is_static(NodeConstHandle nh) const { | ||
| return (nh.get_type() == RMF::REPRESENTATION) && | ||
| !nh.get_static_value(provenance_).get_is_null(); | ||
| } | ||
| RMF_SHOWABLE(ProvenanceFactory, "ProvenanceFactory"); | ||
| }; | ||
|
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| } /* namespace decorator */ | ||
| } /* namespace RMF */ | ||
| RMF_DISABLE_WARNINGS | ||
|
|
||
| #endif /* RMF_DECORATOR_PROVENANCE_H */ |
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