Merge branch 'update_benchmarks' of github.com:sanctuuary/RestAPE int…

…o update_benchmarks
sanctuuary · Dec 16, 2024 · 422bf57 · 422bf57
2 parents 5dce109 + f604f7c
commit 422bf57
Showing 1 changed file with 48 additions and 48 deletions.
diff --git a/src/test/java/nl/esciencecenter/PubmetricBenchmarksTest.java b/src/test/java/nl/esciencecenter/PubmetricBenchmarksTest.java
@@ -24,58 +24,58 @@ public class PubmetricBenchmarksTest {
     //     assertFalse(response.isEmpty());
     // }
 
-    @Test
-    public void testSendPostToPubmetricWithString() throws IOException {
-        // Hardcoded CWL content string
-        String cwlFileContent = """
-                # WorkflowNo_3
-# This workflow is generated by APE (https://github.com/sanctuuary/APE).
-cwlVersion: v1.2
-class: Workflow
+//     @Test
+//     public void testSendPostToPubmetricWithString() throws IOException {
+//         // Hardcoded CWL content string
+//         String cwlFileContent = """
+//                 # WorkflowNo_3
+// # This workflow is generated by APE (https://github.com/sanctuuary/APE).
+// cwlVersion: v1.2
+// class: Workflow
 
-label: WorkflowNo_3
-doc: A workflow including the tool(s) Comet, idconvert, ProteinProphet.
+// label: WorkflowNo_3
+// doc: A workflow including the tool(s) Comet, idconvert, ProteinProphet.
 
-inputs:
-  input_1:
-    type: File
-    format: "http://edamontology.org/format_3244" # mzML
-  input_2:
-    type: File
-    format: "http://edamontology.org/format_1929" # FASTA
-steps:
-  Comet_01:
-    run: https://raw.githubusercontent.com/Workflomics/containers/main/cwl/tools/Comet/Comet.cwl
-    in:
-      Comet_in_1: input_1
-      Comet_in_2: input_2
-    out: [Comet_out_1, Comet_out_2, Comet_out_3]
-  idconvert_02:
-    run: https://raw.githubusercontent.com/Workflomics/containers/main/cwl/tools/idconvert/idconvert_to_pepXML.cwl
-    in:
-      idconvert_in_1: Comet_01/Comet_out_2
-    out: [idconvert_out_1]
-  ProteinProphet_03:
-    run: https://raw.githubusercontent.com/Workflomics/containers/main/cwl/tools/ProteinProphet/ProteinProphet.cwl
-    in:
-      ProteinProphet_in_1: idconvert_02/idconvert_out_1
-      ProteinProphet_in_2: input_2
-    out: [ProteinProphet_out_1, ProteinProphet_out_2]
-outputs:
-  output_1:
-    type: File
-    format: "http://edamontology.org/format_3747" # protXML
-    outputSource: ProteinProphet_03/ProteinProphet_out_1
+// inputs:
+//   input_1:
+//     type: File
+//     format: "http://edamontology.org/format_3244" # mzML
+//   input_2:
+//     type: File
+//     format: "http://edamontology.org/format_1929" # FASTA
+// steps:
+//   Comet_01:
+//     run: https://raw.githubusercontent.com/Workflomics/containers/main/cwl/tools/Comet/Comet.cwl
+//     in:
+//       Comet_in_1: input_1
+//       Comet_in_2: input_2
+//     out: [Comet_out_1, Comet_out_2, Comet_out_3]
+//   idconvert_02:
+//     run: https://raw.githubusercontent.com/Workflomics/containers/main/cwl/tools/idconvert/idconvert_to_pepXML.cwl
+//     in:
+//       idconvert_in_1: Comet_01/Comet_out_2
+//     out: [idconvert_out_1]
+//   ProteinProphet_03:
+//     run: https://raw.githubusercontent.com/Workflomics/containers/main/cwl/tools/ProteinProphet/ProteinProphet.cwl
+//     in:
+//       ProteinProphet_in_1: idconvert_02/idconvert_out_1
+//       ProteinProphet_in_2: input_2
+//     out: [ProteinProphet_out_1, ProteinProphet_out_2]
+// outputs:
+//   output_1:
+//     type: File
+//     format: "http://edamontology.org/format_3747" # protXML
+//     outputSource: ProteinProphet_03/ProteinProphet_out_1
 
-                """;
+//                 """;
 
-        // Convert the string to a byte array
-        byte[] cwlFileBytes = cwlFileContent.getBytes();
+//         // Convert the string to a byte array
+//         byte[] cwlFileBytes = cwlFileContent.getBytes();
 
-        // Call the method to test
-        JSONObject response = ToolBenchmarkingAPIs.sendPostToPubmetric(cwlFileBytes);
+//         // Call the method to test
+//         JSONObject response = ToolBenchmarkingAPIs.sendPostToPubmetric(cwlFileBytes);
 
-        // Verify that the response is not null
-        assertFalse(response.isEmpty());
-    }
+//         // Verify that the response is not null
+//         assertFalse(response.isEmpty());
+//     }
 }