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Implement chunking to speed up alignment #74

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priyanka-surana opened this issue Jun 27, 2023 · 1 comment · Fixed by #113
Closed

Implement chunking to speed up alignment #74

priyanka-surana opened this issue Jun 27, 2023 · 1 comment · Fixed by #113
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@reichan1998
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enhancement Improvement of the existing features question Further information is requested

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@priyanka-surana
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Description of feature

Implement chunking to speed up alignment for long read data with minimap2
@priyanka-surana priyanka-surana added enhancement Improvement of the existing features feature Requests for new features labels Jun 27, 2023
@priyanka-surana priyanka-surana added this to the 1.2.0 milestone Jun 27, 2023
@muffato
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muffato commented Jun 28, 2023

Related to #35

@muffato muffato removed this from the 1.2.0 milestone Dec 8, 2023
@muffato muffato removed the enhancement Improvement of the existing features label Jun 1, 2024
@muffato muffato moved this to To do in readmapping Jun 5, 2024
@muffato muffato added enhancement Improvement of the existing features question Further information is requested and removed feature Requests for new features labels Jun 17, 2024
@reichan1998 reichan1998 mentioned this issue Aug 13, 2024
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@tkchafin tkchafin linked a pull request Sep 16, 2024 that will close this issue
Implement cram chunking and minimap2-based Hi-C alignments #113
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@github-project-automation github-project-automation bot moved this from Todo to Done in Genome After Party Sep 17, 2024
@github-project-automation github-project-automation bot moved this from To do to Done in readmapping Sep 17, 2024
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@reichan1998 reichan1998

Labels
enhancement Improvement of the existing features question Further information is requested
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Genome After Party
Status: Done
readmapping
Status: Done
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Implement cram chunking and minimap2-based Hi-C alignments reichan1998/readmapping
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@muffato @tkchafin @priyanka-surana @reichan1998