removing bacio depedency

.github/workflows/ci_build_scm_ubuntu_22.04.yml

@@ -17,7 +17,6 @@ jobs:
     env:
       NFHOME:     /home/runner/netcdf-fortran
       NFVERSION:  v4.5.3
-      bacio_ROOT: /home/runner/bacio
       sp_ROOT:    /home/runner/NCEPLIBS-sp
       w3emc_ROOT: /home/runner/myw3emc
       SCM_ROOT:   /home/runner/work/ccpp-scm/ccpp-scm
@@ -85,23 +84,6 @@ jobs:
         sudo apt-get install intel-hpckit-getting-started intel-oneapi-clck intel-oneapi-common-licensing intel-oneapi-common-vars
         sudo apt-get install intel-oneapi-dev-utilities  intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic intel-oneapi-compiler-fortran intel-oneapi-itac
 
-    - name: Cache bacio library v2.4.1
-      id: cache-bacio-fortran
-      uses: actions/cache@v3
-      with:
-        path: /home/runner/bacio
-        key: cache-bacio-fortran-${{matrix.fortran-compiler}}-key
-
-    - name: Install bacio library v2.4.1
-      if: steps.cache-bacio-fortran.outputs.cache-hit != 'true'
-      run: |
-        git clone --branch v2.4.1 https://github.com/NOAA-EMC/NCEPLIBS-bacio.git bacio
-        cd bacio && mkdir build && cd build
-        cmake -DCMAKE_INSTALL_PREFIX=${bacio_ROOT} ../
-        make -j2
-        make install
-        echo "bacio_DIR=/home/runner/bacio/lib/cmake/bacio" >> $GITHUB_ENV
-
     - name: Cache SP-library v2.3.3
       id: cache-sp-fortran
       uses: actions/cache@v3

.github/workflows/ci_build_scm_ubuntu_22.04_nvidia.yml

@@ -17,7 +17,6 @@ jobs:
     # Environmental variables
     env:
       NETCDF:      /home/runner/netcdf
-      bacio_ROOT:  /home/runner/bacio
       sp_ROOT:     /home/runner/NCEPLIBS-sp
       w3emc_ROOT:  /home/runner/myw3emc
       SCM_ROOT:    /home/runner/work/ccpp-scm/ccpp-scm
@@ -185,23 +184,6 @@ jobs:
         make
         make install
 
-    - name: Cache bacio library v2.4.1
-      id: cache-bacio-fortran
-      uses: actions/cache@v3
-      with:
-        path: /home/runner/bacio
-        key: cache-bacio-fortran-${{matrix.fortran-compiler}}-key
-
-    - name: Install bacio library v2.4.1
-      if: steps.cache-bacio-fortran.outputs.cache-hit != 'true'
-      run: |
-        git clone --branch v2.4.1 https://github.com/NOAA-EMC/NCEPLIBS-bacio.git bacio
-        cd bacio && mkdir build && cd build
-        cmake -DCMAKE_INSTALL_PREFIX=${bacio_ROOT} ../
-        make -j2
-        make install
-        echo "bacio_DIR=/home/runner/bacio/lib/cmake/bacio" >> $GITHUB_ENV
-
     - name: Cache SP-library v2.3.3
       id: cache-sp-fortran
       uses: actions/cache@v3

.github/workflows/ci_run_scm_DEPHY.yml

@@ -16,7 +16,6 @@ jobs:
     env:
       NFHOME:     /home/runner/netcdf-fortran
       NFVERSION:  v4.5.3
-      bacio_ROOT: /home/runner/bacio
       sp_ROOT:    /home/runner/NCEPLIBS-sp
       w3emc_ROOT: /home/runner/myw3emc
       SCM_ROOT:   /home/runner/work/ccpp-scm/ccpp-scm
@@ -54,23 +53,6 @@ jobs:
     #######################################################################################
     # Install FORTRAN dependencies
     #######################################################################################
-    - name: Cache bacio library v2.4.1
-      id: cache-bacio-fortran
-      uses: actions/cache@v3
-      with:
-        path: /home/runner/bacio
-        key: cache-bacio-fortran-${{matrix.fortran-compiler}}-key
-
-    - name: Install bacio library v2.4.1
-      if: steps.cache-bacio-fortran.outputs.cache-hit != 'true'
-      run: |
-        git clone --branch v2.4.1 https://github.com/NOAA-EMC/NCEPLIBS-bacio.git bacio
-        cd bacio && mkdir build && cd build
-        cmake -DCMAKE_INSTALL_PREFIX=${bacio_ROOT} ../
-        make -j2
-        make install
-        echo "bacio_DIR=/home/runner/bacio/lib/cmake/bacio" >> $GITHUB_ENV
-
     - name: Cache SP-library v2.3.3
       id: cache-sp-fortran
       uses: actions/cache@v3

.github/workflows/ci_run_scm_rts.yml

@@ -17,7 +17,6 @@ jobs:
     env:
       NFHOME:     /home/runner/netcdf-fortran
       NFVERSION:  v4.5.3
-      bacio_ROOT: /home/runner/bacio
       sp_ROOT:    /home/runner/NCEPLIBS-sp
       w3emc_ROOT: /home/runner/myw3emc
       SCM_ROOT:   /home/runner/work/ccpp-scm/ccpp-scm
@@ -71,23 +70,6 @@ jobs:
         echo "CC=icx"         >> $GITHUB_ENV
         echo "FC=ifort"       >> $GITHUB_ENV
 
-    - name: Cache bacio library v2.4.1
-      id: cache-bacio-fortran
-      uses: actions/cache@v3
-      with:
-        path: /home/runner/bacio
-        key: cache-bacio-fortran-${{matrix.fortran-compiler}}-key
-
-    - name: Install bacio library v2.4.1
-      if: steps.cache-bacio-fortran.outputs.cache-hit != 'true'
-      run: |
-        git clone --branch v2.4.1 https://github.com/NOAA-EMC/NCEPLIBS-bacio.git bacio
-        cd bacio && mkdir build && cd build
-        cmake -DCMAKE_INSTALL_PREFIX=${bacio_ROOT} ../
-        make -j2
-        make install
-        echo "bacio_DIR=/home/runner/bacio/lib/cmake/bacio" >> $GITHUB_ENV
-
     - name: Cache SP-library v2.3.3
       id: cache-sp-fortran
       uses: actions/cache@v3

docker/Dockerfile

@@ -21,7 +21,7 @@ RUN cd /comsoftware/ccpp-scm/ \
 # Obtain the pre-computed look-up tables for running with Thompson microphysics
 RUN cd /comsoftware/ccpp-scm/ \
   && . contrib/get_thompson_tables.sh
-  
+
 # Run the machine setup script to set environment variables
 ENV CC=/opt/rh/devtoolset-9/root/usr/bin/gcc
 ENV CXX=/opt/rh/devtoolset-9/root/usr/bin/g++
@@ -37,11 +37,10 @@ RUN cd /comsoftware/ccpp-scm/contrib \
   && cd .. \
   && ./contrib/build_nceplibs.sh $PWD/nceplibs
 
-ENV bacio_ROOT /comsoftware/ccpp-scm/nceplibs
 ENV sp_ROOT /comsoftware/ccpp-scm/nceplibs
 ENV w3nco_ROOT /comsoftware/ccpp-scm/nceplibs
 
-# Create your own link from python -> python3 
+# Create your own link from python -> python3
 # This works without setting the system PATH env var
 # since /usr/local/bin is before /usr/bin in the search path.
 USER root
@@ -56,7 +55,7 @@ RUN cd /comsoftware/ccpp-scm/scm \
   && make -j4
 
 # The analysis scripts have options for using LaTeX when making figure labels.
-# If you would like to install LaTeK, uncomment the section below. 
+# If you would like to install LaTeK, uncomment the section below.
 # Note: This will increase the image size by 1 GB.
 #USER root
 #RUN yum -y update \

scm/doc/TechGuide/chap_quick.rst

@@ -25,7 +25,7 @@ Obtaining Code
 The source code for the SCM, CCPP, and their required components are provided through GitHub.
 The latest release branch contains the tested and supported version for
 general use, while the development branch (``main``) contains the latest
-developer code, but may not be as stable or consistent with existing documentation. 
+developer code, but may not be as stable or consistent with existing documentation.
 Instructions for using either option are discussed here.
 
 Release Code
@@ -127,7 +127,7 @@ System Requirements, Libraries, and Tools
 -----------------------------------------
 
 The source code for the SCM and CCPP components is in the form of
-programs written in FORTRAN 90 (with some required features from the 
+programs written in FORTRAN 90 (with some required features from the
 FORTRAN 2008 standard), and C. In addition, the model I/O
 relies on the NetCDF libraries. Beyond the standard scripts, the build
 system relies on use of the Python scripting language, along with cmake,
@@ -158,14 +158,12 @@ Further, there are several utility libraries as part of the hpc-stack
 package that must be installed with environment variables pointing to
 their locations prior to building the SCM.
 
--  bacio - Binary I/O Library
-
 -  sp - Spectral Transformation Library
 
 -  w3emc - GRIB decoder and encoder library
 
 The following environment variables are used by the build system to
-properly link these libraries: ``bacio_ROOT``, ``sp_ROOT``, and ``w3emc_ROOT`` Computational platforms on
+properly link these libraries: ``sp_ROOT``, and ``w3emc_ROOT`` Computational platforms on
 which these libraries are prebuilt and installed in a central location
 are referred to as *preconfigured* platforms. Examples of preconfigured
 platforms are most NOAA high-performance computing machines (using the
@@ -231,8 +229,8 @@ installing prerequisite libraries. Visit
 https://github.com/NOAA-EMC/hpc-stack for instructions for installing
 prerequisite libraries via *hpc-stack* in their docs directory. UFS users who
 already installed libraries via the *hpc-stack* package only need to set the
-compiler (``CC``, ``CXX``, ``FC``), NetCDF (``NetCDF_ROOT``), and ``bacio``,
-``sp`` and ``w3emc`` (``bacio_ROOT``, ``sp_ROOT``, ``w3emc_ROOT``) environment variables to point
+compiler (``CC``, ``CXX``, ``FC``), NetCDF (``NetCDF_ROOT``),
+``sp`` and ``w3emc`` (``sp_ROOT``, ``w3emc_ROOT``) environment variables to point
 to their installation paths in order to compile the SCM.
 
 The SCM uses only a small part of the UFS *hpc-stack* package and has fewer
@@ -301,7 +299,7 @@ If the download step fails, make sure that your system’s firewall does
 not block access to GitHub. If it does, download the files ``comparison_data.tar.gz``,
 ``physics_input_data.tar.gz``, ``processed_case_input.tar.gz``, and ``raw_case_input.tar.gz``
 from the GitHub release website using your browser and manually extract its
-contents in the directory ``scm/data``. Similarly, do the same for 
+contents in the directory ``scm/data``. Similarly, do the same for
 ``thompson_tables.tar.gz`` and ``MG_INCCN_data.tar.gz`` and extract
 to ``scm/data/physics_input_data/``.
 
@@ -756,7 +754,7 @@ GNU-based Docker image:
 
 -  Python - 3
 
--  NCEPLIBS subset: bacio v2.4.1_4, sp v2.3.3_d, w3emc v2.9.2_d
+-  NCEPLIBS subset: sp v2.3.3_d, w3emc v2.9.2_d
 
 A Docker image containing the SCM, CCPP, and its software prerequisites
 can be generated from the code in the software repository obtained by

scm/etc/modules/derecho_gnu.lua

@@ -20,7 +20,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
 load("sp/2.3.3")
 load("w3emc")
 

scm/etc/modules/derecho_intel.lua

@@ -20,7 +20,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
 load("sp/2.3.3")
 load("w3emc")
 

scm/etc/modules/hera_gnu.lua

@@ -20,7 +20,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
 load("sp/2.3.3")
 load("w3emc")
 

scm/etc/modules/hera_intel.lua

@@ -19,7 +19,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
 load("sp/2.3.3")
 load("w3emc")
 

scm/etc/modules/jet_gnu.lua

@@ -21,7 +21,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
 load("sp/2.3.3")
 load("w3emc")
 

scm/etc/modules/jet_intel.lua

@@ -21,7 +21,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
 load("sp/2.3.3")
 load("w3emc")
 

scm/etc/modules/orion_gnu.lua

@@ -20,7 +20,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
 load("sp/2.3.3")
 load("w3emc")
 

scm/etc/modules/orion_intel.lua

@@ -20,7 +20,6 @@ load("py-netcdf4/1.5.8")
 
 load("netcdf-c/4.9.2")
 load("netcdf-fortran/4.6.0")
-load("bacio/2.4.1")
 load("sp/2.3.3")
 load("w3emc")
 

scm/src/CMakeLists.txt

@@ -50,7 +50,7 @@ else()
     RESULT_VARIABLE return_code
     )
 endif()
-  
+
 # Check return code from CCPP prebuild.py
 if(return_code EQUAL 0)
   message (STATUS "CCPP prebuild step completed successfully")
@@ -68,7 +68,6 @@ include(CMakeForceCompiler)
 SET(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CMAKE_SOURCE_DIR}/../../CMakeModules/Modules)
 
 find_package(NetCDF REQUIRED COMPONENTS C Fortran)
-find_package(bacio REQUIRED)
 find_package(sp    REQUIRED)
 find_package(w3emc REQUIRED)
 
@@ -130,35 +129,35 @@ set(SIMDMULTIARCH   OFF CACHE BOOL "Enable multi-target SIMD instruction sets")
 # Set compile options
 if (${CMAKE_Fortran_COMPILER_ID} MATCHES "GNU")
   set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -ggdb -fbacktrace -cpp -fcray-pointer -ffree-line-length-none -fno-range-check")
-  
+
   if(${CMAKE_Fortran_COMPILER_VERSION} VERSION_GREATER_EQUAL 10)
       set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -fallow-argument-mismatch -fallow-invalid-boz")
   endif()
-  
+
   if(NOT 32BIT)
       set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -fdefault-real-8 -fdefault-double-8")
   endif()
-  
+
   if (${CMAKE_BUILD_TYPE} MATCHES "Debug")
     set(CMAKE_Fortran_FLAGS_DEBUG "${CMAKE_Fortran_FLAGS_DEBUG} -O0 -fno-unsafe-math-optimizations -frounding-math -fsignaling-nans -ffpe-trap=invalid,zero,overflow -fbounds-check")
     set(CMAKE_C_FLAGS_DEBUG "${CMAKE_C_FLAGS_DEBUG} -O0")
   else()
     set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -O2")
     set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -O2")
   endif()
-  
+
   set(CMAKE_C_FLAGS_RELEASE       "-O2 -fPIC" CACHE STRING "" FORCE)
   set(CMAKE_Fortran_FLAGS_RELEASE "-O2 -fPIC" CACHE STRING "" FORCE)
   set(CMAKE_C_FLAGS_BITFORBIT       "-O2 -fPIC" CACHE STRING "" FORCE)
   set(CMAKE_Fortran_FLAGS_BITFORBIT "-O2 -fPIC" CACHE STRING "" FORCE)
 elseif (${CMAKE_Fortran_COMPILER_ID} MATCHES "Intel")
   set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -g -traceback -fpp -fno-alias -auto -safe-cray-ptr -ftz -assume byterecl -nowarn -sox -align array64byte -qno-opt-dynamic-align")
   set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -qno-opt-dynamic-align -sox -fp-model source")
-  
+
   if(NOT 32BIT)
       set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -real-size 64")
   endif()
-  
+
   if (${CMAKE_BUILD_TYPE} MATCHES "Debug")
     set(CMAKE_Fortran_FLAGS_DEBUG "${CMAKE_Fortran_FLAGS_DEBUG} -O0 -check -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -ftrapuv -init=snan,arrays")
     set(CMAKE_C_FLAGS_DEBUG "${CMAKE_C_FLAGS_DEBUG} -O0 -ftrapuv")
@@ -181,7 +180,7 @@ elseif (${CMAKE_Fortran_COMPILER_ID} MATCHES "Intel")
         set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -march=core-avx-i")
     endif()
   endif()
-  
+
   set(CMAKE_C_FLAGS_RELEASE       "-O2 -fPIC" CACHE STRING "" FORCE)
   set(CMAKE_Fortran_FLAGS_RELEASE "-O2 -fPIC" CACHE STRING "" FORCE)
   set(CMAKE_C_FLAGS_BITFORBIT       "-O2 -fPIC" CACHE STRING "" FORCE)
@@ -199,7 +198,7 @@ elseif (${CMAKE_Fortran_COMPILER_ID} MATCHES "NVHPC")
   if(NOT 32BIT)
       set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -r8")
   endif()
-  
+
   if (${CMAKE_BUILD_TYPE} MATCHES "Debug")
     set(CMAKE_Fortran_FLAGS_DEBUG "${CMAKE_Fortran_FLAGS_DEBUG} -O0 -g")
     set(CMAKE_C_FLAGS_DEBUG "${CMAKE_C_FLAGS_DEBUG} -O0 -g")
@@ -211,7 +210,7 @@ elseif (${CMAKE_Fortran_COMPILER_ID} MATCHES "NVHPC")
   set(MPI_C_COMPILER mpicc)
   set(MPI_CXX_COMPILER mpicxx)
   set(MPI_Fortran_COMPILER mpif90)
-  
+
   set(CMAKE_C_FLAGS_RELEASE       "-O2 -fPIC" CACHE STRING "" FORCE)
   set(CMAKE_Fortran_FLAGS_RELEASE "-O2 -fPIC" CACHE STRING "" FORCE)
   set(CMAKE_C_FLAGS_BITFORBIT       "-O2 -fPIC" CACHE STRING "" FORCE)
@@ -277,7 +276,6 @@ if(OPENMP)
   TARGET_LINK_LIBRARIES(scm PUBLIC OpenMP::OpenMP_Fortran)
 endif()
 TARGET_LINK_LIBRARIES(scm NetCDF::NetCDF_Fortran)
-TARGET_LINK_LIBRARIES(scm bacio::bacio_4)
 TARGET_LINK_LIBRARIES(scm sp::sp_d)
 TARGET_LINK_LIBRARIES(scm w3emc::w3emc_d)
 TARGET_LINK_LIBRARIES(scm ccpp_framework)
@@ -292,4 +290,3 @@ ADD_CUSTOM_COMMAND(
         COMMAND ${CMAKE_COMMAND} -E create_symlink
                 ${CMAKE_SOURCE_DIR}/run_scm.py
                 ${CMAKE_CURRENT_BINARY_DIR}/run_scm.py)
-