Skip to content

Issues: segrelab/comets

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

22 Open 9 Closed
22 Open 9 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Gurobi package name changed from gurobi to com.gurobi.gurobi in new version and cause package not found error in COMETS
#52 opened May 23, 2024 by gaospecial
2
Global static metabolite does not work in cometspy.
#46 opened Jan 17, 2023 by dukovski
Varying dilution rate
#43 opened Apr 22, 2022 by bigsuicideparty
3
comets --version implementation
#39 opened Oct 29, 2020 by jeremymchacon
default diffusion constants should be in layout, not parameters
#38 opened Oct 29, 2020 by jeremymchacon
Sorting exchange reactions when loading model file
#25 opened Jan 28, 2020 by mquintin
1
Death in COMETS feature request
#23 opened Dec 11, 2019 by sulheim
1 of 5 tasks
3
Bug fix: objective reaction not adhering to upper bound
#18 opened Aug 29, 2019 by mquintin
1
Media log has extra time step when simulation stops before maxCycles
#16 opened Jul 22, 2019 by mquintin
Code cleanup: Remove concept of 2d worlds, treat as 3d with thickness 1
#15 opened Jul 22, 2019 by mquintin
Feature request: "Load from script" in GUI to enable loading layout and params file with one action
#14 opened Jul 22, 2019 by mquintin
Metabolite diffusion constants not carried over after Save/Load Simulation State
#13 opened Jul 22, 2019 by mquintin
If pauseeachstep is false in a parameters file, the box does not show unchecked in the GUI
#12 opened Jul 22, 2019 by mquintin
Death rate is not zero when set using the COMETS Toolbox and COMETS 2.0.3
#11 opened Jul 22, 2019 by mquintin
Layout file reload fails
#10 opened Jul 22, 2019 by mquintin
How to handle exchange reactions in models that have them in the wrong direction
#9 opened Jul 22, 2019 by mquintin
Feeding sparse matrices to Gurobi for the evolution algorithm
#8 opened Jul 22, 2019 by mquintin
Change standard FBA exchange and pseudomonod not to take excess metabolites
#6 opened Jul 22, 2019 by mquintin
Negative biomass flux for tiny uptakes from GUROBI
#4 opened Jul 22, 2019 by mquintin
GUI can change parameters from model file
#3 opened Jul 22, 2019 by mquintin
Model diffusivity does not update if models are loaded before the default is changed
#2 opened Jul 22, 2019 by mquintin
Handling invalid Parameter options
#1 opened Jul 22, 2019 by mquintin
ProTip! no:milestone will show everything without a milestone.