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faster Cox, fix to tests #43

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faster Cox, fix to tests #43

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jonathan-taylor and others added 30 commits September 24, 2019 23:37
@jonathan-taylor
updating .travis.yml to do a doc build
b6dd8ae
@jonathan-taylor
trying to fix .travis.yml
7ce3837 
switching when we change directory

fixing path

needed rtd theme

need pandoc

removing print statement
@jonathan-taylor
full model simulation
3ea185b
@jonathan-taylor
BF: fixing seed in some tests that can fail randomly
f01f3c0
@jonathan-taylor
added Lee and ROSI examples to docs
a1879b2
@jonathan-taylor
updating install instructions
93636b1
@jonathan-taylor
change of title
6dc72a4
updates to python scripts to selectinf
f3c5a36
@jonathan-taylor
C code for update for Cox partial likelihood
c5052da
@jonathan-taylor
updated C software for cox, wrapper
32502b3
@jonathan-taylor
minor fixes, added Cox code
3a41a6b
@jonathan-taylor
merging
d6a1aa5
@jonathan-taylor
updating C, cleanup cox
5a89aa3
@jonathan-taylor
added case weights but results don't quite agree with R
74098c7
@jonathan-taylor
updated cox code
94e2c6a
@jonathan-taylor
updating C software
ffbc2e1
@jonathan-taylor
fixing imports
b35e935
@jonathan-taylor
some regreg changes to incorporate, more np decorators
0b7d566
@jonathan-taylor
one more missing import
9b6a065
@jonathan-taylor
fix to travis yaml
82bc491
@jonathan-taylor
comment causing problem in travis
357cb4c
@jonathan-taylor
older version of glmnet for older version of R
38eb998
@jonathan-taylor
forcing to be an ndarray
798718a
@jonathan-taylor
fixing version of glmnet
f552441
@jonathan-taylor
try doc build with 3.6
048b18c
@jonathan-taylor
removing doc build for now
2808d30
@jonathan-taylor
py35 build on appveyor failing for pandas / cython issue
44bdd2b
@snigdhagit
added class for posterior sampling
245411a
@jonathan-taylor
Merge branch 'snigdhagit-master' into test-snigdha-merge
11e3e1e
@jonathan-taylor
reverting imports to original form, attributes can be found in other …
0f5e4d6 
…parts of lasso object for posterior
Snigdha Panigrahi and others added 30 commits November 5, 2021 21:22
removed regress_opt from return list; some more consistency fixes
eb0d16e
@jonathan-taylor
Merge pull request #57 from snigdhagit/refactor_names
b295db6 
Fixed variable names for consistency; removed regress_opt from return list
@jonathan-taylor
a little reorg -- one method for inference
4418bf7
@jonathan-taylor
BF: fixing method name
ffd89dd
@jonathan-taylor
more cleanup, added QuerySpec named tuple
e7a1c4a
@jonathan-taylor
more cleanup of selective_MLE
a7704a4
@jonathan-taylor
specification as a property; use QS instead of Q; standardizing grid_…
7bbcf90 
…inference
@jonathan-taylor
simplifying grid methods
559bc96
@jonathan-taylor
renaming temporary matrices
aea5df8
@jonathan-taylor
more cleanup; remains to unify U1,U2,U3... calculation across 4 methods
8fffbb2
adjusted cov in split_lasso; adjusted intervals for actual target in …
53645b7 
…exact_ref
minor fix in return list
dad81a2
@jonathan-taylor
Merge pull request #58 from snigdhagit/refactor_names
34dc78a 
Fixes: split lasso; adjusted intervals for exact
@jonathan-taylor
fixing approx_reference
40cd77b
@jonathan-taylor
refactor SLOPE to new form; added split_slope
1508e06
moved U1-5 calculations from methods to base
8d05d91
@jonathan-taylor
Merge pull request #59 from snigdhagit/refactor_names
dd1bae0 
moved  U1-5 calculations from methods to base
@jonathan-taylor
WIP: screeening
a63dae6
@jonathan-taylor
removed redundant interaction functions; have the U quantities comput…
a481857 
…ed in a class method
@jonathan-taylor
bootstrap lasso version
a425869
@jonathan-taylor
updating docs
74369ba
@jonathan-taylor
update requirements, remove some np.float
4aee7ad
@jonathan-taylor
Merge branch 'bootstrap'
442ca90
@jonathan-taylor
update python version for readthedocs
14f022d
@jonathan-taylor
adding regreg as a submodule
5552303
@jonathan-taylor
trying to build regreg first
57da659
@jonathan-taylor
trying path of regreg
f503c5c
@jonathan-taylor
trying again
6d2260d
@jonathan-taylor
using URL in requirements file
456dcb8
@jonathan-taylor
trying again
e448111
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2 participants
@jonathan-taylor @snigdhagit