Format output

seppinho · Jul 4, 2018 · 2ffb812 · 2ffb812
1 parent d69415a
commit 2ffb812
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/src/main/java/genepi/mut/pileup/PileupToolLocal.java b/src/main/java/genepi/mut/pileup/PileupToolLocal.java
@@ -140,7 +140,8 @@ public boolean accept(File dir, String name) {
 
 			if (version.equals("mtdna") && reference == Reference.hg19) {
 
-				System.out.println(" File " + file.getName() + " excluded! File is aligned to Yoruba (Reference length 16571) and not rCRS. ");
+				System.out.println(" File " + file.getName()
+						+ " excluded! File is aligned to Yoruba (Reference length 16571) and not rCRS. ");
 
 				continue;
 
@@ -166,7 +167,8 @@ else if (version.equals("mtdna") && reference == Reference.rcrs) {
 				}
 
 			} else {
-				System.out.println("Can not identify a valid reference length! " + file.getAbsolutePath());
+
+				System.out.println("File " + file.getName() + " excluded. Can not identify a valid reference length!");
 
 				continue;
 			}