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[seqan] update to 2.3.2 release
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@h-2
h-2 committed Jun 16, 2017
1 parent 892c7e8 commit 485d1ef
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion include/seqan
Submodule seqan updated 61 files
+16 −0 CHANGELOG.rst
+2 −2 README.rst
+1 −1 apps/alf/CMakeLists.txt
+6 −1 apps/bs_tools/CMakeLists.txt
+1 −1 apps/dfi/CMakeLists.txt
+1 −1 apps/fiona/CMakeLists.txt
+11 −19 apps/fiona/fiona.cpp
+1 −1 apps/fx_tools/CMakeLists.txt
+1 −1 apps/gustaf/CMakeLists.txt
+1 −1 apps/insegt/CMakeLists.txt
+1 −1 apps/mason2/CMakeLists.txt
+1 −1 apps/micro_razers/CMakeLists.txt
+1 −1 apps/ngs_roi/CMakeLists.txt
+1 −1 apps/pair_align/CMakeLists.txt
+1 −1 apps/param_chooser/CMakeLists.txt
+1 −1 apps/rabema/CMakeLists.txt
+1 −1 apps/razers/CMakeLists.txt
+1 −1 apps/razers3/CMakeLists.txt
+1 −1 apps/rep_sep/CMakeLists.txt
+1 −1 apps/sak/CMakeLists.txt
+1 −1 apps/sam2matrix/CMakeLists.txt
+1 −1 apps/samcat/CMakeLists.txt
+1 −1 apps/searchjoin/CMakeLists.txt
+9 −7 apps/searchjoin/db.h
+7 −10 apps/searchjoin/join.cpp
+7 −9 apps/searchjoin/search.cpp
+1 −1 apps/seqan_tcoffee/CMakeLists.txt
+1 −1 apps/seqcons2/CMakeLists.txt
+1 −1 apps/sgip/CMakeLists.txt
+1 −1 apps/snp_store/CMakeLists.txt
+1 −1 apps/splazers/CMakeLists.txt
+1 −1 apps/stellar/CMakeLists.txt
+1 −1 apps/tree_recon/CMakeLists.txt
+1 −1 apps/yara/CMakeLists.txt
+97 −0 demos/tutorial/parsing_command_line_arguments/base.cpp
+0 −0 demos/tutorial/parsing_command_line_arguments/base.cpp.stdout
+2 −2 dox/CMakeLists.txt
+0 −0 dox/dox_only.sh.in
+0 −0 dox/run.sh.in
+2 −2 include/seqan/align/dp_scout_simd.h
+24 −40 include/seqan/arg_parse/arg_parse_argument.h
+53 −3 include/seqan/arg_parse/arg_parse_ctd_support.h
+15 −9 include/seqan/arg_parse/arg_parse_version_check.h
+4 −4 include/seqan/index/index_bidirectional_stree.h
+17 −11 include/seqan/index/index_bifm_stree.h
+1 −0 include/seqan/journaled_string_tree/journaled_string_tree_impl.h
+8 −4 include/seqan/seq_io/sequence_file.h
+1 −1 include/seqan/version.h
+2 −2 manual/source/Infrastructure/Use/CustomBuildSystem.rst
+34 −10 manual/source/Infrastructure/Use/FindSeqAnCMake.rst
+121 −94 manual/source/Tutorial/GettingStarted/ParsingCommandLineArguments.rst
+11 −7 tests/arg_parse/test_app.ctd
+1 −0 tests/arg_parse/test_arg_parse_ctd_support.h
+1 −1 tests/arg_parse/test_arg_parse_version_check.h
+5 −9 tests/index/test_index_bifm.cpp
+0 −2 tests/platform/test_platform_range_based_for_loops.h
+12 −9 tests/seq_io/test_tag_select_intersect.h
+1 −0 util/cmake/FindSeqAn.cmake
+59 −0 util/cmake/SeqAnConsistentFPFlags.cmake
+1 −1 util/pkgconfig/seqan.pc.in
+3 −0 util/travis/linux-cibuild.sh

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