remove bad example

seroanalytics · Jun 27, 2024 · 51ac705 · 51ac705
1 parent e7e8e3a
commit 51ac705
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Showing 2 changed files with 10 additions and 4 deletions.
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -27,6 +27,16 @@ jobs:
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
+      - name: cmdstan env vars
+        run: |
+          echo "CMDSTAN=${HOME}/.cmdstan" >> $GITHUB_ENV
+        shell: bash
+
+      - name: Install cmdstan
+        run: |
+          cmdstanr::check_cmdstan_toolchain(fix = TRUE)
+          cmdstanr::install_cmdstan(cores = 2)
+        shell: Rscript {0}
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:

diff --git a/R/model.R b/R/model.R
@@ -10,10 +10,6 @@
 #' @param time_type One of 'relative' or 'absolute'.
 #' @param ... Named arguments to the `sample()` method of CmdStan model
 #'   objects: <https://mc-stan.org/cmdstanr/reference/model-method-sample.html>
-#' @examples
-#' if (instantiate::stan_cmdstan_exists()) {
-#'   res <- run_model(data = dt, priors = epikinetic_priors(), chains = 4, parallel_chains = 4, iter_warmup = 100, iter_sampling = 400, threads_per_chain = 4)
-#' }
 run_model <- function(priors,
                       data = NULL,
                       file_path = NULL,