change pkgdown

.github/workflows/pkgdown.yaml

@@ -33,19 +33,6 @@ jobs:
         with:
           extra-packages: any::pkgdown, local::.
 
-      # Install Ruby and Jekyll
-      - name: Setup Ruby
-        uses: ruby/setup-ruby@v1
-        with:
-          ruby-version: '3.0'  # Set this according to your needs
-          bundler-cache: true
-
-      - name: Install Jekyll
-        run: bundle install
-
-      - name: Build Jekyll Site
-        run: bundle exec jekyll build
-
       - name: Deploy to GitHub Pages 🚀
         if: github.event_name != 'pull_request'
         uses: JamesIves/[email protected]

vignettes/model_define.Rmd

@@ -236,9 +236,16 @@ save_info <- list(
     model_name = "ex1"
 )
 
+# Using more than one core might fail on windows, 
+if (.Platform$OS.type == "windows") {
+  mc.cores <- 1
+} else {
+  mc.cores <- 2 # use as many as available, preferably 4.
+}
+
 rj_settings <- list(
         numberChainRuns = 4, 
-        numberCores = 2,
+        numberCores = mc.cores,
         iterations = 2000,
         burninPosterior = 1000,
         thin = 1

vignettes/sim_recovery.Rmd

@@ -265,6 +265,7 @@ p1 / p2
 
 ```{r, message=FALSE, warning=FALSE, results='hide'}
 
+
 rj_settings <- list(
         numberChainRuns = 4, 
         iterations = 400000,