working: init commit

.Rprofile

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+if (file.exists("renv")) {
+  source("renv/activate.R")
+} else {
+  # The `renv` directory is automatically skipped when deploying with rsconnect.
+  message("No 'renv' directory found; renv won't be activated.")
+}
+
+# Allow absolute module imports (relative to the app root).
+options(box.path = getwd())

.github/workflows/rhino-test.yml

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+name: Rhino Test
+on:
+  # Run on pushes to 'main' branch
+  push:
+    branches:
+      - main
+  # Run on any opened pull request
+  pull_request:
+  # Run manually via GitHub Actions website
+  workflow_dispatch:
+permissions:
+  contents: read
+jobs:
+  main:
+    name: Run linters and tests
+    runs-on: ubuntu-22.04
+    steps:
+      - name: Checkout repo
+        uses: actions/checkout@v4
+
+      - name: Setup system dependencies
+        run: |
+          packages=(
+            # List each package on a separate line.
+          )
+          sudo apt-get update
+          sudo apt-get install --yes "${packages[@]}"
+
+      - name: Setup R
+        uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: renv
+
+      - name: Setup R dependencies
+        uses: r-lib/actions/setup-renv@v2
+
+      - name: Setup Node
+        uses: actions/setup-node@v3
+        with:
+          node-version: 20
+
+      - name: Lint R
+        if: always()
+        shell: Rscript {0}
+        run: rhino::lint_r()
+
+      - name: Lint JavaScript
+        if: always()
+        shell: Rscript {0}
+        run: rhino::lint_js()
+
+      - name: Lint Sass
+        if: always()
+        shell: Rscript {0}
+        run: rhino::lint_sass()
+
+      - name: Build JavaScript
+        if: always()
+        shell: Rscript {0}
+        run: rhino::build_js()
+
+      - name: Build Sass
+        if: always()
+        shell: Rscript {0}
+        run: rhino::build_sass()
+
+      - name: Run R unit tests
+        if: always()
+        shell: Rscript {0}
+        run: rhino::test_r()
+
+      - name: Run Cypress end-to-end tests
+        if: always()
+        uses: cypress-io/github-action@v6
+        with:
+          working-directory: .rhino # Created by earlier commands which use Node.js
+          start: npm run run-app
+          project: ../tests
+          wait-on: 'http://localhost:3333/'
+          wait-on-timeout: 60

.lintr

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+linters:
+  linters_with_defaults(
+    defaults = box.linters::rhino_default_linters,
+    line_length_linter = line_length_linter(100)
+  )

.renvignore

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+# Only use `dependencies.R` to infer project dependencies.
+*
+!dependencies.R

.rscignore

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+.github
+.lintr
+.renvignore
+.Renviron
+.rhino
+.rscignore
+tests

app.R

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+# Rhino / shinyApp entrypoint. Do not edit.
+#setwd("serosim_rhino/")
+#rhino::build_sass()
+#rhino::build_js()
+
+library(devtools)
+#install("../serosim")
+rhino::app()

app/js/index.js

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+export function showHelp() {
+    alert('Learn more about Rhino: https://appsilon.github.io/rhino/');
+}

app/logic/__init__.R

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+# Logic: application code independent from Shiny.
+# https://go.appsilon.com/rhino-project-structure