Skip to content

Issues: sgkit-dev/bio2zarr

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

24 Open 112 Closed
24 Open 112 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

LPL no smaller than PL bug Something isn't working
#277 opened Jul 23, 2024 by jeromekelleher
1
14
Inspect fails for datasets with out consolidated metadata
#276 opened Jul 22, 2024 by benjeffery
Optional first phasing symbol introduced in VCF 4.4
#263 opened Jul 1, 2024 by timothymillar
4
Run tests against Zarr 3
#254 opened Jun 17, 2024 by tomwhite
13
Restructure vcf2zarr docs
#239 opened Jun 9, 2024 by jeromekelleher
Refactor docs build infrastructure
#238 opened Jun 9, 2024 by jeromekelleher
Document copying to cloud storage documentation Improvements or additions to documentation help wanted Extra attention is needed
#234 opened Jun 4, 2024 by jeromekelleher
1
New tool: tskit2zarr
#232 opened Jun 3, 2024 by jeromekelleher
8
Fixup msprime based tests when packages are fixed
#223 opened May 25, 2024 by jeromekelleher
Inconsistent input/output argument order
#219 opened May 23, 2024 by hyanwong
6
vcf2zarr leaks semaphore objects
#209 opened May 15, 2024 by tomwhite
16
Replace python -m bio2zarr vcf2zarr with python -m bio2zarr.vcf2zarr?
#203 opened May 14, 2024 by jeromekelleher
2
Improve encoding memory bound estimate enhancement New feature or request
#186 opened May 7, 2024 by jeromekelleher
SVCR Local alleles
#185 opened May 7, 2024 by jeromekelleher
9
Windows support help wanted Extra attention is needed
#174 opened May 2, 2024 by jeromekelleher
Document dexplode/dencode usage on different schedulers
#147 opened Apr 26, 2024 by jeromekelleher
2
Track missingness count for each field in ICF
#131 opened Apr 19, 2024 by jeromekelleher
More informative errors on IntermediateColumnarFormat missing files enhancement New feature or request
#95 opened Mar 27, 2024 by jeromekelleher
Test with indels overlapping VCF region boundaries
#68 opened Mar 6, 2024 by jeromekelleher
Test on VCF/BCF indexes not produced by htslib
#60 opened Mar 3, 2024 by jeromekelleher
Notebook progress support
#34 opened Feb 23, 2024 by jeromekelleher
4
Provide mechanism to change types of fields enhancement New feature or request help wanted Extra attention is needed
#33 opened Feb 23, 2024 by jeromekelleher
Add non-genotype data to plink conversion
#20 opened Feb 20, 2024 by jeromekelleher
1
Add max_alt_alleles option to schema generation
#18 opened Feb 20, 2024 by jeromekelleher
1
ProTip! no:milestone will show everything without a milestone.