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f2sz: FASTA 2 seekable zstd.
It compress a file into a seekable zstd, splitting the file into multiple frames.
The compressed archive can be decompressed with any Zstandard tool, including zstd.
To take advantage of seeking see the following projects:
C/C++ library: https://github.com/martinellimarco/libzstd-seek
Python library: https://github.com/martinellimarco/indexed_zstd
I hope this comment is relevant to seqkit.
Cheers!
The text was updated successfully, but these errors were encountered:
I don't really know how seqkit works with compressed fasta files. But I ran into this seekable zstd fasta format developed for the amazing Logan project.
Here is the paper : https://www.biorxiv.org/content/10.1101/2024.07.30.605881v1
And the code : https://github.com/asl/f2sz
The command help also gives more information :
I hope this comment is relevant to seqkit.
Cheers!
The text was updated successfully, but these errors were encountered: