coverage/regression update

smart-on-fhir · Oct 31, 2024 · 05e2026 · 05e2026
1 parent bd5d6e5
commit 05e2026
Show file tree

Hide file tree

Showing 29 changed files with 10 additions and 0 deletions.
diff --git a/.../core__count_allergyintolerance_month.csv → ...__count_allergyintolerance_month.cube.csv b/.../core__count_allergyintolerance_month.csv → ...__count_allergyintolerance_month.cube.csv
diff --git a/...e__count_allergyintolerance_month.parquet → ...unt_allergyintolerance_month.cube.parquet b/...e__count_allergyintolerance_month.parquet → ...unt_allergyintolerance_month.cube.parquet
diff --git a/...reference/core__count_condition_month.csv → ...ence/core__count_condition_month.cube.csv b/...reference/core__count_condition_month.csv → ...ence/core__count_condition_month.cube.csv
diff --git a/...rence/core__count_condition_month.parquet → .../core__count_condition_month.cube.parquet b/...rence/core__count_condition_month.parquet → .../core__count_condition_month.cube.parquet
diff --git a/...e/core__count_documentreference_month.csv → ...e__count_documentreference_month.cube.csv b/...e/core__count_documentreference_month.csv → ...e__count_documentreference_month.cube.csv
diff --git a/...re__count_documentreference_month.parquet → ...ount_documentreference_month.cube.parquet b/...re__count_documentreference_month.parquet → ...ount_documentreference_month.cube.parquet
diff --git a/...rence/core__count_encounter_all_types.csv → .../core__count_encounter_all_types.cube.csv b/...rence/core__count_encounter_all_types.csv → .../core__count_encounter_all_types.cube.csv
diff --git a/...e/core__count_encounter_all_types.parquet → ...e__count_encounter_all_types.cube.parquet b/...e/core__count_encounter_all_types.parquet → ...e__count_encounter_all_types.cube.parquet
diff --git a/...core__count_encounter_all_types_month.csv → ..._count_encounter_all_types_month.cube.csv b/...core__count_encounter_all_types_month.csv → ..._count_encounter_all_types_month.cube.csv
diff --git a/...__count_encounter_all_types_month.parquet → ...nt_encounter_all_types_month.cube.parquet b/...__count_encounter_all_types_month.parquet → ...nt_encounter_all_types_month.cube.parquet
diff --git a/...reference/core__count_encounter_month.csv → ...ence/core__count_encounter_month.cube.csv b/...reference/core__count_encounter_month.csv → ...ence/core__count_encounter_month.cube.csv
diff --git a/...rence/core__count_encounter_month.parquet → .../core__count_encounter_month.cube.parquet b/...rence/core__count_encounter_month.parquet → .../core__count_encounter_month.cube.parquet
diff --git a/.../core__count_encounter_priority_month.csv → ...__count_encounter_priority_month.cube.csv b/.../core__count_encounter_priority_month.csv → ...__count_encounter_priority_month.cube.csv
diff --git a/...e__count_encounter_priority_month.parquet → ...unt_encounter_priority_month.cube.parquet b/...e__count_encounter_priority_month.parquet → ...unt_encounter_priority_month.cube.parquet
diff --git a/...e/core__count_encounter_service_month.csv → ...e__count_encounter_service_month.cube.csv b/...e/core__count_encounter_service_month.csv → ...e__count_encounter_service_month.cube.csv
diff --git a/...re__count_encounter_service_month.parquet → ...ount_encounter_service_month.cube.parquet b/...re__count_encounter_service_month.parquet → ...ount_encounter_service_month.cube.parquet
diff --git a/...ence/core__count_encounter_type_month.csv → ...core__count_encounter_type_month.cube.csv b/...ence/core__count_encounter_type_month.csv → ...core__count_encounter_type_month.cube.csv
diff --git a/.../core__count_encounter_type_month.parquet → ...__count_encounter_type_month.cube.parquet b/.../core__count_encounter_type_month.parquet → ...__count_encounter_type_month.cube.parquet
diff --git a/...e/core__count_medicationrequest_month.csv → ...e__count_medicationrequest_month.cube.csv b/...e/core__count_medicationrequest_month.csv → ...e__count_medicationrequest_month.cube.csv
diff --git a/...re__count_medicationrequest_month.parquet → ...ount_medicationrequest_month.cube.parquet b/...re__count_medicationrequest_month.parquet → ...ount_medicationrequest_month.cube.parquet
diff --git a/...nce/core__count_observation_lab_month.csv → ...ore__count_observation_lab_month.cube.csv b/...nce/core__count_observation_lab_month.csv → ...ore__count_observation_lab_month.cube.csv
diff --git a/...core__count_observation_lab_month.parquet → ..._count_observation_lab_month.cube.parquet b/...core__count_observation_lab_month.parquet → ..._count_observation_lab_month.cube.parquet
diff --git a/...ression/reference/core__count_patient.csv → ...on/reference/core__count_patient.cube.csv b/...ression/reference/core__count_patient.csv → ...on/reference/core__count_patient.cube.csv
diff --git a/...ion/reference/core__count_patient.parquet → ...eference/core__count_patient.cube.parquet b/...ion/reference/core__count_patient.parquet → ...eference/core__count_patient.cube.parquet
diff --git a/.../regression/reference/core__meta_date.csv → ...ession/reference/core__meta_date.meta.csv b/.../regression/reference/core__meta_date.csv → ...ession/reference/core__meta_date.meta.csv
diff --git a/...ression/reference/core__meta_date.parquet → ...on/reference/core__meta_date.meta.parquet b/...ression/reference/core__meta_date.parquet → ...on/reference/core__meta_date.meta.parquet
diff --git a/...gression/reference/core__meta_version.csv → ...ion/reference/core__meta_version.meta.csv b/...gression/reference/core__meta_version.csv → ...ion/reference/core__meta_version.meta.csv
diff --git a/...sion/reference/core__meta_version.parquet → ...reference/core__meta_version.meta.parquet b/...sion/reference/core__meta_version.parquet → ...reference/core__meta_version.meta.parquet
diff --git a/tests/test_actions.py b/tests/test_actions.py
@@ -355,6 +355,16 @@ def test_export_study(tmp_path, mock_db_core_config):
     )
     for file in pathlib.Path(f"{tmp_path}/export").glob("*.*"):
         assert file in manifest.get_export_table_list()
+    # Do this a second time to check that cleanup happens
+    exporter.export_study(
+        config=mock_db_core_config,
+        manifest=manifest,
+        data_path=f"{tmp_path}/export",
+        archive=False,
+        chunksize=20,
+    )
+    for file in pathlib.Path(f"{tmp_path}/export").glob("*.*"):
+        assert file in manifest.get_export_table_list()
 
 
 @freeze_time("2024-01-01")