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Removing redundant tests #141

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merged 2 commits into from
Sep 19, 2023
Merged

Removing redundant tests #141

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557a9f8
Removing the test script for simreads. The tests inside abismal are e…
andrewdavidsmith Sep 18, 2023
e57c295
Updating the tests to remove only one that is really redundant and no…
andrewdavidsmith Sep 19, 2023
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14 changes: 9 additions & 5 deletions Makefile.am
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Original file line number Diff line number Diff line change
Expand Up @@ -67,7 +67,6 @@ EXTRA_DIST = \
data/two_epialleles.states \
data/araTha1_simulated.counts.gz \
test_scripts/test_abismalidx.test \
test_scripts/test_simreads.test \
test_scripts/test_abismal.test \
test_scripts/test_format.test \
test_scripts/test_uniq.test \
Expand Down Expand Up @@ -96,8 +95,15 @@ AM_CPPFLAGS = -I $(top_srcdir)/src/common -I $(top_srcdir)/src/smithlab_cpp -I $

CXXFLAGS = -Wall -O3 $(OPENMP_CXXFLAGS) # default has optimization on

TESTS = test_scripts/test_simreads.test \
test_scripts/test_abismalidx.test \
### ADS: Testing with `make check` can be a long process. Testing with
### `make check` is designed to work recursively. Modifying this
### behavior requires overriding build-in rules which generates
### warnings, probably for good reason. Defining a check-local only
### adds to functionality and does not remove the dependency that
### causes the recursion. The preferred alternative is to do `make`
### first and then `make check-TESTS` after. This will not do tests
### recursively.
TESTS = test_scripts/test_abismalidx.test \
test_scripts/test_abismal.test \
test_scripts/test_format.test \
test_scripts/test_uniq.test \
Expand Down Expand Up @@ -230,8 +236,6 @@ CLEANFILES = \
tests/reads.mstats \
tests/reads.sam \
tests/reads.ustats \
tests/simreads_1.fq \
tests/simreads_2.fq \
tests/tRex1.idx \
tests/tRex1_promoters.roi.bed \
tests/reads.counts.select \
Expand Down
2 changes: 0 additions & 2 deletions data/md5sum.txt
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Expand Up @@ -14,8 +14,6 @@ af8b97ef25af8a16ced1537ca4a74d07 tests/reads.hmr
916fe07a1d03449b65dfc1458d7c1c40 tests/reads.mstats
65816bee34b977adf1dd798fbf85d758 tests/reads.sam
1aecbb2b12bd867405118eae42de6743 tests/reads.ustats
ae8e662c3ab23ba742a45a9784390e63 tests/simreads_1.fq
d2723d2e99d2a3492af508633d61b30a tests/simreads_2.fq
bcbf01be810cbf4051292813eb6b9225 tests/tRex1.idx
7c84dafb85252a04a45704da71eba7c4 tests/tRex1_promoters.roi.bed
e7e9590475a7f9b1ae41701d81892e57 tests/two_epialleles.amr
Expand Down
18 changes: 0 additions & 18 deletions test_scripts/test_simreads.test
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