fix ci template #9
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name: CI | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
jobs: | |
formatting: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out the code | |
uses: actions/checkout@v3 | |
- name: Install poetry | |
run: pipx install poetry | |
- name: Determine dependencies | |
run: poetry lock | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.9" | |
cache: poetry | |
- name: Install Dependencies using Poetry | |
run: poetry install | |
- name: Check formatting | |
run: poetry run black --check . | |
linting: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out the code | |
uses: actions/checkout@v3 | |
- name: Install poetry | |
run: pipx install poetry | |
- name: Determine dependencies | |
run: poetry lock | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.9" | |
cache: poetry | |
- name: Install Dependencies using Poetry | |
run: poetry install | |
- name: Check code | |
run: poetry run flake8 | |
testing: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Install poetry | |
run: pipx install poetry | |
- name: Determine dependencies | |
run: poetry lock | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.9" | |
cache: poetry | |
- name: Install dependencies | |
run: | | |
poetry install | |
- name: Install example plugin | |
run: | | |
pip install --no-dependencies git+https://github.com/snakemake/snakemake-executor-flux.git | |
- name: Run pytest | |
run: poetry run coverage run -m pytest tests/tests.py | |
- name: Run Coverage | |
run: poetry run coverage report -m |