Description

CIONo is a deprecated prototype of an graph pathfinding plugin for Cytoscape intended for ontologies.

For more information, see Anatoli Zeiser's Master's Thesis.

Requirements

Running: Java 8 JRE

Compiling: Java 8 SDK, Maven

Installation

1. Create the jar with mvn package or download it from a release
2. Run Cytoscape and enable the plugin via Apps-> App Manager -> Install from File...

No Maintenance Intended

As a research prototype for a masters's thesis, we cannot offer support for CIONo. It was tested with Cytoscape 3.4.0 and may not work with other future versions. The author of the thesis and the prototype is Anatoli Zeiser, but he finished University and probably does not have time to support it as well.

Licensing

We absolutely encorage you to use, extend or do whatever you want with the code in conformance to the GNU GPL v3.0. If you need different licensing, please contact Anatoli Zeiser.