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Rstudio Server on CSDE

Kevin Weiss edited this page Mar 16, 2017 · 3 revisions

CSDE maintains Rstudio Servers on three nodes: libra, union, and nori. To access these, point a web browser to one of these:

All three use your CSDE id/pass, not the UWNETID/pass.

Make sure that your R library is set up with all the necessary packages on CRAN using:

install.packages("EpiModel", dependencies = TRUE)

If you are using a more current version of R (such as Microsoft Open R 3.3.2), you may need to add a specific repository call to CRAN in order to install packages.

install.packages("EpiModel", dependencies = TRUE, repos = "cran.rstudio.com")

On these servers, we can use the `devtools` package to install Github repositories:
```r
install.packages("devtools")
devtools::install_github("statnet/EpiModelHPC")
devtools::install_github("statnet/EpiModelHIVmsm")