Add the fastcat tool #31
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| name: build docker images | |
| on: | |
| push: | |
| paths: | |
| - 'deepmod2/**' | |
| - 'deepmod2-gpu/**' | |
| - 'annovar/**' | |
| - 'fastcat/**' | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| build-and-push: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| include: | |
| - app: deepmod2 | |
| platforms: linux/amd64 | |
| - app: deepmod2-gpu | |
| platforms: linux/amd64 | |
| - app: annovar | |
| platforms: linux/amd64,linux/arm64 | |
| - app: fastcat | |
| platforms: linux/amd64,linux/arm64 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Log in to GitHub Container Registry | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Read version file | |
| id: get_version | |
| run: echo "version=$(cat ${{ matrix.app }}/version)" >> $GITHUB_OUTPUT | |
| - name: Check if files changed | |
| id: files_changed | |
| run: | | |
| if git diff-tree --no-commit-id --name-only -r HEAD | grep -q "^${{ matrix.app }}/"; then | |
| echo "changed=true" >> $GITHUB_OUTPUT | |
| else | |
| echo "changed=false" >> $GITHUB_OUTPUT | |
| fi | |
| - name: Build and push Docker image | |
| if: ${{ steps.files_changed.outputs.changed == 'true' }} | |
| uses: docker/build-push-action@v4 | |
| with: | |
| context: ${{ matrix.app }} | |
| platforms: ${{ matrix.platforms }} | |
| push: true | |
| tags: ghcr.io/${{ github.repository_owner }}/${{ matrix.app }}:${{ steps.get_version.outputs.version }} | |
| build-args: | | |
| BUILD_VERSION=${{ steps.get_version.outputs.version }} | |
| - name: Debug Output | |
| run: | | |
| echo "Event name: ${{ github.event_name }}" | |
| echo "App: ${{ matrix.app }}" | |
| echo "Files changed: ${{ steps.files_changed.outputs.changed }}" | |
| echo "Version: ${{ steps.get_version.outputs.version }}" |