3.9.4

Features:

• Snakemake wrappers up to 5.5.0
• tasks updated
• Agat update

3.9.3

Features:

• Easy snakemake-wrappers update
• Easy conda envs update
• New testing pipeline with additional format checks
• Snakemake wrappers update to 5.3.0
• Agat, python, and Snakemake environments update

Doc:

• Citation cff file

3.9.2

Features:

• Environement pins

Documentation

• Update for the configuration section

3.9.0

Features:

• Fasta to 2bit
• Snakemake-wrappers up to 4.5.0

3.8.1

Features:

• Memory/Time reservation adjusted

3.8.0

Features:

• STAR indexes
• Salmon index
• Genepred file formats
• Re-use of indexed files

3.7.0

Fix:

• Blacklist download link updated
• Agat temporary file handled

Features:

• Include bowtie2 indexes

3.6.2

Fix:

• Protect against nan values in genome queries

3.6.1

Features:

• Documentation udpate

Fix:

• blacklist merge fixed

3.6.0

Features:

• Separate resources among subdirectories holding genome names
• Snakemake up to 8.13.0
• Snakemake wrappers up to 3.12.0