scornful-mountaincat: linux, macos, macos-arm64, windows, ubuntu-release #10

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1 error and 10 warnings

No such keg: /usr/local/Cellar/r

pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config

HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!

macOS's Gatekeeper has been disabled for this Cask

Some mutation types are not mentioned within the offset argument. These types will have an offset of 0 by default

Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.

Found tags in max_tags column, you should increase max_tags to

Tree and genomes have different y-scale expansions. This can cause slight misalignments of leaves and sequences.

Some mutation types are not mentioned within the offset argument. These types will have an offset of 0 by default

No shared levels found between `names(values)` of the manual scale and the