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@sage-wright sage-wright released this 10 Dec 17:08
· 12 commits to main since this release
v2.2.0
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tbp-parser v2.2.0

This release removes the following drug-gene combinations from the globals.GENE_TO_ANTIMICROBIAL_DRUG_NAME dictionary:

  • gyrA and gyrB:
    • ciprofloxacin
    • fluoroquinolones
    • ofloxacin
  • rrs:
    • aminoglycosides

In addition, if a drug is missing in the TBProfiler JSON's gene_associated_drugs field that can be found in our internal dictionary (globals.GENE_TO_ANTIMICROBIAL_DRUG_NAME), it will be added for the mutation. The source field will indicate it was added separately from TBDB.

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