enable conda and singularity for test config

theislab · Nov 6, 2023 · 49e8cb6 · 49e8cb6
1 parent 6c41264
commit 49e8cb6
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/nextflow.config b/nextflow.config
@@ -446,7 +446,11 @@ profiles {
         apptainer.enabled      = false
     }
     test { 
-        includeConfig 'test.config'       
+        includeConfig 'test.config'
+        singularity.enabled    = true
+        singularity.runOptions = "--bind $PWD"
+        singularity.cacheDir = "$PWD"
+        conda.enabled          = true       
     }
 }