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alitinet committed Nov 16, 2024
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# Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
# Multigrate: multiomic data integration for single-cell genomics

[![Tests][badge-tests]][link-tests]
[![Documentation][badge-docs]][link-docs]
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- [Paired integration and query-to-reference mapping](https://multigrate.readthedocs.io/en/latest/notebooks/paired_integration_cite-seq.html) [![Open In Colab][badge-colab]](https://colab.research.google.com/github/theislab/multigrate/blob/main/docs/notebooks/paired_integration_cite-seq.ipynb)
- [Trimodal integration and query-to-reference mapping](https://multigrate.readthedocs.io/en/latest/notebooks/trimodal_integration.html) [![Open In Colab][badge-colab]](https://colab.research.google.com/github/theislab/multigrate/blob/main/docs/notebooks/trimodal_integration.ipynb)
- [Classification with MIL](https://multigrate.readthedocs.io/en/latest/notebooks/mil_classification.html) [![Open In Colab][badge-colab]](https://colab.research.google.com/github/theislab/multigrate/blob/main/docs/notebooks/mil_classification.ipynb)

## Installation

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## Citation

> **Multimodal Weakly Supervised Learning to Identify Disease-Specific Changes in Single-Cell Atlases**
> **Multigrate: Single-Cell Multi-Omic Data Integration**
>
> Anastasia Litinetskaya, Maiia Shulman, Soroor Hediyeh-zadeh, Amir Ali Moinfar, Fabiola Curion, Artur Szalata, Alireza Omidi, Mohammad Lotfollahi, and Fabian J. Theis.
> 2024. bioRxiv. https://doi.org/10.1101/2024.07.29.605625.
> Mohammad Lotfollahi, Anastasia Litinetskaya, and Fabian J. Theis. 2022.
> 2024. bioRxiv. [https://doi.org/10.1101/2022.03.16.484643][https://doi.org/10.1101/2022.03.16.484643].

## Reproducibility
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