ci: Need to install R on Ubuntu 24.04 #1587
Workflow file for this run
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
# | |
# NOTE: This workflow is overkill for most R packages and | |
# check-standard.yaml is likely a better choice. | |
# usethis::use_github_action("check-standard") will install it. | |
on: | |
push: | |
branches: | |
- main | |
- master | |
- release | |
- cran-* | |
pull_request: | |
branches: | |
- main | |
- master | |
workflow_dispatch: | |
inputs: | |
ref: | |
description: "Branch, tag, or commit to check out" | |
required: false | |
default: "main" | |
versions-matrix: | |
description: "Create a matrix of R versions" | |
type: boolean | |
default: false | |
dep-suggests-matrix: | |
description: "Create a matrix of suggested dependencies" | |
type: boolean | |
default: false | |
merge_group: | |
types: | |
- checks_requested | |
schedule: | |
- cron: "10 0 * * *" | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }}-${{ inputs.ref || github.head_ref || github.sha }}-${{ github.base_ref || '' }} | |
cancel-in-progress: true | |
name: rcc | |
jobs: | |
rcc-smoke: | |
runs-on: ubuntu-24.04 | |
outputs: | |
sha: ${{ steps.commit.outputs.sha }} | |
versions-matrix: ${{ steps.versions-matrix.outputs.matrix }} | |
dep-suggests-matrix: ${{ steps.dep-suggests-matrix.outputs.matrix }} | |
name: "Smoke test: stock R" | |
# Begin custom: services | |
# End custom: services | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
ref: ${{ inputs.ref }} | |
- name: Update status for rcc | |
# FIXME: Wrap into action | |
if: github.event_name == 'workflow_dispatch' | |
env: | |
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
run: | | |
# Check status of this workflow | |
state="pending" | |
sha=${{ inputs.ref }} | |
if [ -z "${sha}" ]; then | |
sha=${{ github.head_ref }} | |
fi | |
if [ -z "${sha}" ]; then | |
sha=${{ github.sha }} | |
fi | |
sha=$(git rev-parse ${sha}) | |
html_url=$(gh api \ | |
-H "Accept: application/vnd.github+json" \ | |
-H "X-GitHub-Api-Version: 2022-11-28" \ | |
repos/${{ github.repository }}/actions/runs/${{ github.run_id }} | jq -r .html_url) | |
description="${{ github.workflow }} / ${{ github.job }}" | |
gh api \ | |
--method POST \ | |
-H "Accept: application/vnd.github+json" \ | |
-H "X-GitHub-Api-Version: 2022-11-28" \ | |
repos/${{ github.repository }}/statuses/${sha} \ | |
-f "state=${state}" -f "target_url=${html_url}" -f "description=${description}" -f "context=rcc" | |
shell: bash | |
- uses: ./.github/workflows/rate-limit | |
with: | |
token: ${{ secrets.GITHUB_TOKEN }} | |
- uses: ./.github/workflows/git-identity | |
- uses: ./.github/workflows/custom/before-install | |
if: hashFiles('.github/workflows/custom/before-install/action.yml') != '' | |
- uses: ./.github/workflows/install | |
with: | |
token: ${{ secrets.GITHUB_TOKEN }} | |
cache-version: rcc-smoke-2 | |
needs: check, website | |
# Beware of using dev pkgdown here, has brought in dev dependencies in the past | |
extra-packages: any::rcmdcheck r-lib/roxygen2 any::decor r-lib/styler#1235 r-lib/pkgdown deps::. | |
- name: Install package | |
run: | | |
_R_SHLIB_STRIP_=true R CMD INSTALL . | |
shell: bash | |
- uses: ./.github/workflows/custom/after-install | |
if: hashFiles('.github/workflows/custom/after-install/action.yml') != '' | |
- id: versions-matrix | |
# Only run for pull requests if the base repo is different from the head repo, not for workflow_dispatch if not requested, always run for other events | |
if: (github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.repository) && (github.event_name != 'workflow_dispatch' || inputs.versions-matrix) | |
uses: ./.github/workflows/versions-matrix | |
- id: dep-suggests-matrix | |
# Not for workflow_dispatch if not requested, always run for other events | |
if: github.event_name != 'workflow_dispatch' || inputs.dep-suggests-matrix | |
uses: ./.github/workflows/dep-suggests-matrix | |
- uses: ./.github/workflows/update-snapshots | |
with: | |
base: ${{ inputs.ref || github.head_ref }} | |
- uses: ./.github/workflows/style | |
- uses: ./.github/workflows/roxygenize | |
- name: Remove config files from previous iteration | |
run: | | |
rm -f .github/dep-suggests-matrix.json .github/versions-matrix.json | |
shell: bash | |
- id: commit | |
uses: ./.github/workflows/commit | |
with: | |
token: ${{ secrets.GITHUB_TOKEN }} | |
- uses: ./.github/workflows/check | |
with: | |
results: ${{ runner.os }}-smoke-test | |
- uses: ./.github/workflows/pkgdown-build | |
if: github.event_name != 'push' | |
- uses: ./.github/workflows/pkgdown-deploy | |
if: github.event_name == 'push' | |
# Upload sha as artifact | |
- run: | | |
echo -n "${{ steps.commit.outputs.sha }}" > rcc-smoke-sha.txt | |
shell: bash | |
- uses: actions/upload-artifact@v4 | |
with: | |
name: rcc-smoke-sha | |
path: rcc-smoke-sha.txt | |
- name: Update status for rcc | |
# FIXME: Wrap into action | |
if: always() && github.event_name == 'workflow_dispatch' | |
env: | |
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
run: | | |
# Check status of this workflow | |
if [ "${{ job.status }}" == "success" ]; then | |
state="success" | |
else | |
state="failure" | |
fi | |
sha=${{ steps.commit.outputs.sha }} | |
if [ -z "${sha}" ]; then | |
sha=${{ inputs.ref }} | |
fi | |
if [ -z "${sha}" ]; then | |
sha=${{ github.head_ref }} | |
fi | |
if [ -z "${sha}" ]; then | |
sha=${{ github.sha }} | |
fi | |
sha=$(git rev-parse ${sha}) | |
html_url=$(gh api \ | |
-H "Accept: application/vnd.github+json" \ | |
-H "X-GitHub-Api-Version: 2022-11-28" \ | |
repos/${{ github.repository }}/actions/runs/${{ github.run_id }} | jq -r .html_url) | |
description="${{ github.workflow }} / ${{ github.job }}" | |
gh api \ | |
--method POST \ | |
-H "Accept: application/vnd.github+json" \ | |
-H "X-GitHub-Api-Version: 2022-11-28" \ | |
repos/${{ github.repository }}/statuses/${sha} \ | |
-f "state=${state}" -f "target_url=${html_url}" -f "description=${description}" -f "context=rcc" | |
shell: bash | |
rcc-smoke-check-matrix: | |
runs-on: ubuntu-24.04 | |
name: "Check matrix" | |
needs: | |
- rcc-smoke | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
ref: ${{ needs.rcc-smoke.outputs.sha }} | |
- uses: ./.github/workflows/matrix-check | |
with: | |
matrix: ${{ needs.rcc-smoke.outputs.versions-matrix }} | |
- uses: ./.github/workflows/matrix-check | |
with: | |
matrix: ${{ needs.rcc-smoke.outputs.dep-suggests-matrix }} | |
rcc-full: | |
needs: | |
- rcc-smoke | |
runs-on: ${{ matrix.os }} | |
if: ${{ needs.rcc-smoke.outputs.versions-matrix != '' }} | |
name: 'rcc: ${{ matrix.os }} (${{ matrix.r }}) ${{ matrix.desc }}' | |
# Begin custom: services | |
# End custom: services | |
strategy: | |
fail-fast: false | |
matrix: ${{fromJson(needs.rcc-smoke.outputs.versions-matrix)}} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
ref: ${{ needs.rcc-smoke.outputs.sha }} | |
- uses: ./.github/workflows/custom/before-install | |
if: hashFiles('.github/workflows/custom/before-install/action.yml') != '' | |
- uses: ./.github/workflows/install | |
with: | |
r-version: ${{ matrix.r }} | |
cache-version: rcc-full-1 | |
token: ${{ secrets.GITHUB_TOKEN }} | |
needs: check | |
- uses: ./.github/workflows/custom/after-install | |
if: hashFiles('.github/workflows/custom/after-install/action.yml') != '' | |
- uses: ./.github/workflows/update-snapshots | |
if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository | |
- uses: ./.github/workflows/check | |
with: | |
results: ${{ runner.os }}-r${{ matrix.r }} | |
# The status update is taken care of by R-CMD-check-status.yaml | |
rcc-suggests: | |
needs: | |
- rcc-smoke | |
runs-on: ubuntu-22.04 | |
if: ${{ needs.rcc-smoke.outputs.dep-suggests-matrix != '' }} | |
name: Without ${{ matrix.package }} | |
# Begin custom: services | |
# End custom: services | |
strategy: | |
fail-fast: false | |
matrix: ${{fromJson(needs.rcc-smoke.outputs.dep-suggests-matrix)}} | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: ./.github/workflows/custom/before-install | |
if: hashFiles('.github/workflows/custom/before-install/action.yml') != '' | |
- uses: ./.github/workflows/install | |
with: | |
cache-version: rcc-dev-${{ matrix.package }}-1 | |
needs: check | |
extra-packages: "any::rcmdcheck any::remotes ." | |
token: ${{ secrets.GITHUB_TOKEN }} | |
- name: Remove ${{ matrix.package }} and all strong dependencies | |
run: | | |
pkg <- "${{ matrix.package }}" | |
pkgs <- tools::package_dependencies(pkg, reverse = TRUE)[[1]] | |
installed <- rownames(utils::installed.packages()) | |
to_remove <- c(pkg, intersect(pkgs, installed)) | |
print(to_remove) | |
remove.packages(to_remove) | |
shell: Rscript {0} | |
- name: Session info | |
run: | | |
options(width = 100) | |
if (!requireNamespace("sessioninfo", quietly = TRUE)) install.packages("sessioninfo") | |
pkgs <- installed.packages()[, "Package"] | |
sessioninfo::session_info(pkgs, include_base = TRUE) | |
shell: Rscript {0} | |
- uses: ./.github/workflows/custom/after-install | |
if: hashFiles('.github/workflows/custom/after-install/action.yml') != '' | |
- name: Define _R_CHECK_FORCE_SUGGESTS_ | |
run: | | |
cat('_R_CHECK_FORCE_SUGGESTS_=false\n', file = Sys.getenv("GITHUB_ENV"), append = TRUE) | |
shell: Rscript {0} | |
- name: Must allow NOTEs, even with _R_CHECK_FORCE_SUGGESTS_ | |
run: | | |
if (Sys.getenv("RCMDCHECK_ERROR_ON") %in% c("", "note")) { | |
cat('RCMDCHECK_ERROR_ON="warning"\n', file = Sys.getenv("GITHUB_ENV"), append = TRUE) | |
} | |
shell: Rscript {0} | |
- name: Check env vars | |
run: | | |
print(Sys.getenv('_R_CHECK_FORCE_SUGGESTS_')) | |
print(Sys.getenv('RCMDCHECK_ERROR_ON')) | |
shell: Rscript {0} | |
- uses: ./.github/workflows/check | |
with: | |
results: ${{ matrix.package }} | |
# The status update is taken care of by R-CMD-check-status.yaml |