Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
MMseqs2 app to run on your workstation or servers
ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
A NumPy port of the foldseek code for encoding protein structures to 3di.
Fast indexing and search of discontinuous motifs in protein structures
Bioinformatics protocol that aims at mining information at the sequence and structure level of protein chain to detect possible evolutionary conserved residues.
Analysis workflow for novel gene search based on structural similarity search
Many-to-many protein search and querying with Foldseek
Visualizing 3D fragments of proteins in a scatterplot using Foldseek's 3Di and Transformers.
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