IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.

Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow

RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins

Automated pipeline for RNAseq data analysis using nextflow and singularity.

Nanopore direct RNA sequencing for cryptic splice mutation in HLRCC

Calculate five major splicing events using rMATS followed by annotation

Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".